Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01099 ATGGTTACCTTCAGGTTTCATCAATACCAGGTTACGGGTAGGGCTCTTCCTACTGAAAACGATGAGCATCCGAAGATTTATCGGATGAAACTCTGGGCAACTAACGAGGTTCGAGCTAAGTCCAAATTCTGGTATTTTCTGAGGAAACTGAAGAAGGTTAAGAAAAGCAATGGGCAAGTTCTGGCTATCAATGAGATCTTTGAGAAGAATCCCACCAAGATTAAGAACTATGGTATATGGTTGAGGTATCAGAGTCGAACTGGATATCACAACATGTACAAGGAGTATCGTGACACCACCCTAAATGGTGCTGTGGAACAGATGTACACTGAAATGGCTTCAAGGCACAGGGTTAGGTTTCCTTGCATCCAGATCATCAAGACTGCTACAGTCCCCGCCAAGCTTTGCAAGAGGGAGAGCACCAAGCAATTCCATAACTCCAAAATTAAGTTTCCCTTGATTGTCAGGAAGGTTAGGCCTCCAACCAGAAAGCTGAAGACTACATACAAGGCATCAAGACCCAATTTGTTCATGTAA 537 0.4358 MVTFRFHQYQVTGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLIVRKVRPPTRKLKTTYKASRPNLFM* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01099 178 FunFam 60S ribosomal protein L18a 1 71 - -
Pte19g01099 178 FunFam 60S ribosomal protein L18a 72 147 - -
Pte19g01099 178 Gene3D - 1 70 - -
Pte19g01099 178 Hamap 50S ribosomal protein L18Ae [rpl18a]. 6 69 IPR028877 -
Pte19g01099 178 SUPERFAMILY RplX-like 71 146 - -
Pte19g01099 178 PANTHER 60S RIBOSOMAL PROTEIN L18A 3 177 IPR028877 -
Pte19g01099 178 PIRSF Ribosomal_L18a 1 178 IPR021138 GO:0003735|GO:0005840|GO:0006412
Pte19g01099 178 Gene3D - 71 144 - -
Pte19g01099 178 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 7 128 IPR023573 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01099 Pte-Chr19 11566182 11568324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01099 1 179 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 91.620 8.27e-124 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01099 K02882 K22683 qsa:O6P43_032113 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01099 19 11566182 11568324 Pte19g01099 19 11566182 11568324 RCT