Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01094 ATGGCTTCTTCAGCAATGGCTTTGTCATCCCCATCTTTTGTTGGCAAGCCAGTGACGCTTGGAAGATCAACCCCTGAGCTGGGCACTTCAAGAATCACCATGAGAAAAGCTACCACCAAGAAGAGTGTCCCTTCCAGCAGCCCATGGTACGGTCCAGACAGAGTCAAGTACTTGGGCCCATTCTCCGGCGAATCTCCATCCTACCTCACCGGAGAATTCCCAGGTGACTACGGCTGGGACACTGCTGGGCTTTCAGCTGACCCAGAGACCTTTGCTAAGAACCGTGAACTTGAAGTAATCCACTGCAGATGGGCGATGCTTGGTGCTCTTGGATGCGTCTTCCCCGAGCTCTTGGCCCGCAACGGTGTCAAATTCGGCGAGGCCGTGTGGTTCAAGGCTGGAGCGCAGATCTTCAGTGAGGGTGGGCTTGACTACTTGGGCAACCCAAGCTTGGTCCATGCCCAGAGCATCCTTGCTATTTGGGCCTGCCAAGTTATCTTAATGGGTGCTGTTGAGGGTTACAGAATCGCTGGTGGGCCACTTGGTGAGGTGACTGACCCACTCTACCCAGGTGGAAGTTTCGACCCACTGGGTCTTGCTGATGATCCAGAGGCATTTGCTGAGTTGAAGGTGAAGGAAATCAAGAATGGTAGATTGGCCATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCACTGGCAAGGGACCTATTGAAAACCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCATATGCTACAAACTTCGTCCCAGGAAAGTGA 798 0.5226 MASSAMALSSPSFVGKPVTLGRSTPELGTSRITMRKATTKKSVPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01094 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 265 IPR001344 GO:0009765|GO:0016020
Pte19g01094 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Pte19g01094 265 Pfam Chlorophyll A-B binding protein 66 231 IPR022796 -
Pte19g01094 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Pte19g01094 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01094 Pte-Chr19 11425996 11427292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01094 1 266 Chloroplast and Mitochondria Gene Families AT1G29910 86.567 1.23e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01094 K08912 - jre:108990271 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01094 19 11425996 11427292 Pte19g01094 19 11425996 11427292 RCT
Pte2g00960 2 9767440 9768689 Pte19g01094 19 11425996 11427292 RCT