Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01090 ATGAAGCAATCTTTCGATTATTCATTTTCAGGTTTTGCTAAGATTTCATTAATGGATGTTCCTAGAACAATGGAACGCGCTGACTGGGGAATTTTATCAGGAACTGATGCATTCCTTGCCTCAACTGATACTAGCTTATTTTCAAGCTCATTGCCAGTTCTTCCTCATGAAAAATTGAACACAAATGAAAATGGGGATTCGCATCAATCTGTGGATGACATGTCTTCTGATTTGGATAAGCTTCGCCAAGATGTGGATGGCAATGATCTTCTCAATGATGATGAATCCAGTGCTGTTGGAACGTTACTTCCTGGTGATGAGAAGGAACTTTTATCTGGTATAATGGATGATTTTGACCTGAGTCGTTTGCCTGGTTCACTGGAAGACTTGGAAGATTATGACTTTTTTGGCAGTGGTGGAGGTTTGGAACTGGAAAATGACACACAGGAAAGCCTCAGTGCGGGTCTGTCAAAGTTAAGTTTCTCTGACAATGTGCTTGGGTCCGGAGTGTCTCATTTTTCTCTCTCAAATGGTGTGGGAACTGTTTCTGGAGAACATCCATATGGTGAACACCCTTCTAGAACCTTGTTTGTTCGAAATATTAACAGCAATGTTGAGGATTCTGAACTAAGGGCACTCTTTGAGCAATATGGTGATATCAGGGCACTCTATACTGCATGCAAACACAGGGGGTTTGTCATGATATCTTACTATGATATTCGTGCTGCACGAACTGCCATGCGGGCATTGCAAAACAAGCCCCTGAGGCGGAGGAAACTTGATATCCACTTCTCAATACCAAAGGATAATCCATCGGATAAGGATATCAATCAGGGCACCTTAGTTGTATTTAATTTGGATCCTTCAGTTTCAAATGATGACCTTCGTCAGATATTTGGTGCCTATGGTGAGGTCAAAGAGATAAGGGAAACACCACACAAAAGGCATCATAAATTCATTGAATTTTATGATGTTAGAGCTGCAGAAGCAGCGCTTAAGTCATTAAATAGGAGTGACATTGCTGGTAAGCGCATAAAGCTGGAACCTAGTCGTCCTGGTGGAGCTCGTAGAAATTTGGTGCTGCAATTGAATCAAGAGCTTGAGCAAGATGAATCTCGGGGTCTTCGTCACCAAGTTAGTTCACCACTAGCCAACTCTCCACCAGGCAACTGGATAAACTTTGGCAGCCCAATTGAACACAGTACATTACAATCTATCAGCAGATCCCCTGGTAACCAAAACACGAGCCCAACAACTGGGAACTATTTACCTGGATTAGCCTCAATTTTACAGCCACAGGTATCAAATGCTTTAAAGATTGCACCAATTGGCAAGGACCAAGGAAGGAATAGCCACGCAGAGAACATGTTTGCCTGCACAAACTCAGTCAATGGATTTCAACATGCACATTCACTTCCTGATCAAAAACTTGGGCATTACCATGGTGCTATGTCCACTTTTGGGCCCTCAGCTTCAAATGGATCTCCTGTGGAGACACTGTCTGGGCCCCAATTTCTTTGGGGTAAACCTAATCCGTTCTCTGATCATGCCAAATCATCATCCTGGTCTAGACCTTCTTTAGGGTATCCATTTACTTCAAATGGCAAGTCCCATGCCTTCCCATACTCGGGTCAACATCCTTCCTTCATCAATGCAGCCCAATCCCATCACCACCATGTTGGATCTGCTCCATCCGGTGTCCCACTTGAAAGCCATTTTGGGTTCTTCCCTAATTCACCTGAAACTTCATTGACAAATAATGTTTCATATGGAGGCATGGGTGTTGGAAATGGAAATTACATGGTAAATGTAGGCGGTGCAATGAATGCAGGAGTTTGTATACCAGGAAATGTTTCAGAAAATAGTTCATCAAGTTTCAGGATGAGATCTTCTCCTAGGCTTAGTCCTGCATTTTTAGCAAATGGCACATACTCTGGAATTCCACCTCTGCGAATAGATGGTTTTATGGAGCGTGGGCGAAGCAGACGTGTTGAGAATCATGGGAACCAGGTTGATAACAAGAAACAGTTTCAGCTTGATTTGGATAAGATTAAGAGCGGGGAAGATATGCGGACAACCTTAATGATAAAGAATATTCCAAATAAATATACCTCAAAGATGTTGCTGGGTGCTATTGATGAAAACCACAGGGGGACTTATGATTTTCTTTATTTACCAATTGACTTTAAGAACAAGTGTAACGTGGGATATGCATTTATAAACATGCTCTCACCGACTCTAATTATCCCATTTTATGAGACATTTAATGGCAAAAGGTGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCATTAGCATATGCTCGAATCCAAGGAAAATTGGCACTTGTAAATCACTTCCAGAATTCCAGCCTGATGAATGAAGATAAACGTTGCCGTCCTATTGTTTTTCATTCAGATGGTCCTGAAGCAGGTGATCAGATCATTCAAGAACATCTGCCCTCTAATAATTTGAAACTGCAAGACCTGAAGCAGCCAAATGAGTCGTATTCAGGTAACTCTTCTGGAAACTCTGAAGGTGGTTGA 2544 0.4194 MKQSFDYSFSGFAKISLMDVPRTMERADWGILSGTDAFLASTDTSLFSSSLPVLPHEKLNTNENGDSHQSVDDMSSDLDKLRQDVDGNDLLNDDESSAVGTLLPGDEKELLSGIMDDFDLSRLPGSLEDLEDYDFFGSGGGLELENDTQESLSAGLSKLSFSDNVLGSGVSHFSLSNGVGTVSGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRALYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLVLQLNQELEQDESRGLRHQVSSPLANSPPGNWINFGSPIEHSTLQSISRSPGNQNTSPTTGNYLPGLASILQPQVSNALKIAPIGKDQGRNSHAENMFACTNSVNGFQHAHSLPDQKLGHYHGAMSTFGPSASNGSPVETLSGPQFLWGKPNPFSDHAKSSSWSRPSLGYPFTSNGKSHAFPYSGQHPSFINAAQSHHHHVGSAPSGVPLESHFGFFPNSPETSLTNNVSYGGMGVGNGNYMVNVGGAMNAGVCIPGNVSENSSSSFRMRSSPRLSPAFLANGTYSGIPPLRIDGFMERGRSRRVENHGNQVDNKKQFQLDLDKIKSGEDMRTTLMIKNIPNKYTSKMLLGAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMLSPTLIIPFYETFNGKRWEKFNSEKVASLAYARIQGKLALVNHFQNSSLMNEDKRCRPIVFHSDGPEAGDQIIQEHLPSNNLKLQDLKQPNESYSGNSSGNSEGG* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01090 847 Pfam RNA recognition motif 2 691 787 IPR007201 -
Pte19g01090 847 CDD RRM3_MEI2_like 694 779 IPR034454 -
Pte19g01090 847 MobiDBLite consensus disorder prediction 827 847 - -
Pte19g01090 847 MobiDBLite consensus disorder prediction 57 76 - -
Pte19g01090 847 Gene3D - 279 373 IPR012677 -
Pte19g01090 847 SMART rrm1_1 280 348 IPR000504 GO:0003723
Pte19g01090 847 SMART rrm1_1 195 263 IPR000504 GO:0003723
Pte19g01090 847 SMART rrm1_1 693 769 IPR000504 GO:0003723
Pte19g01090 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 346 IPR000504 GO:0003723
Pte19g01090 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 196 260 IPR000504 GO:0003723
Pte19g01090 847 FunFam MEI2-like protein 5 isoform 2 183 277 - -
Pte19g01090 847 PANTHER RNA RECOGNITION MOTIF-CONTAINING 46 806 - -
Pte19g01090 847 CDD RRM2_MEI2_like 278 348 - -
Pte19g01090 847 SUPERFAMILY RNA-binding domain, RBD 693 777 IPR035979 GO:0003676
Pte19g01090 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 267 IPR000504 GO:0003723
Pte19g01090 847 CDD RRM1_MEI2_like 193 269 IPR034453 -
Pte19g01090 847 SUPERFAMILY RNA-binding domain, RBD 191 354 IPR035979 GO:0003676
Pte19g01090 847 MobiDBLite consensus disorder prediction 402 423 - -
Pte19g01090 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 279 352 IPR000504 GO:0003723
Pte19g01090 847 FunFam Protein MEI2-like 1 278 373 - -
Pte19g01090 847 Gene3D - 182 278 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01090 Pte-Chr19 11296829 11303311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01090 189 389 Eukaryotic Initiation Factors Gene Family AT1G71770 25.652 1.85e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01090 - - cave:132170207 1228.39