Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01088 ATGGATCAGGAACCTCTTCTACCATATTCAAGCCCAAGGAAGAAACCACCATCTTTAACCCAACTGTTCACACTTCCAGAGCATGATGAGCTAACTTTGCCCATACCACCTGTAACAAGTATAACACCCTCGGAGCTCAAGGAACGTCTTATCTTCGGTCCATCTTCACCACAAGATTCTTCTTCGGTTTTAATTGAAAGTTTGACTCTTTCTCTCAATTCTCCCAGGCCCTCATCTTCTTCTGCTCCACAAGATTCAGTAAACCCACCAGAACTGTCAAATCAACAAACTTGGCTCCTTGACCCCAATTATTCAATCCATAAAACCAATCTTCACCGGTCCAAAACGGCTCCCGCCATGGCTGCGATCAACGATGTCAAAACGCATCCATCTGTGACTACACAATTTGGTTCTCAAACGATTGTGCGCCAAGCTGTTATCCTTCTCGTGGCTTATTTGATGTTAGGTGTGGCTATATATTGGTTTAACCGTCATGAATTTTCTGCTACTGAGACGCACCCTATTGTGGATGGTATTTACTTTTGTATAGTTACTATGTGCACAATTGGCTATGGTGATATAATACCAACTGGAACAGCAACTAAGTTATTCTCCATTTTGTTTGTGCTGGTGGGATTTGGGTTTATTGACATTTTGCTCAGTGGGATGGTTAGTTATGTTCTTGATTTGCAAGAGAGTTATCTCTTAAATACGGTAAAGGGCAGAGAACAAAAGCATTCTCCACCATCATATATAATTGATGTGAAGAAGGGGAGAATGAGGATTAGACTGAAGGTGGCGTTAGCATTGGGGGTTGTTGTTCTGTGTATCGGAATTGGCATAGTTGTTATGCATTTTGTGGAGAACTTTGGATGGTTGGATTCCCTTTATCTCTCGGTGATGTCAGTTACTACAGTTGGTTACGGGGATCGAGCCTTCAAGTCAATGCCTGGTCGGATTTTCGCTTCAATCTGGTTGCTTGTGTCAACACTTGCTGTGGCACGAGCTTTCCTTTATTTTGCAGAGGCCAGAGTCGACAAGCGGCACAGGAGGATGGTAAAGTGGATTCTTGGTGAAGATATGACAGTTTCTCAATTTTTTGCTGCAGATATAGACAACAATGGATATGTTAGTAAATCAGAATATGTCGTGTACAAGCTCAAGGAGATGGGGAAAGTATCAGAGAAAGACATTATGCTGATATCTCAGAACTTTGATAGACTGGACACTGGCAATTTTGGGAAGATCACTCTTGCTGACCTCATGGAGCATCAACACAAAAGTTAG 1287 0.4227 MDQEPLLPYSSPRKKPPSLTQLFTLPEHDELTLPIPPVTSITPSELKERLIFGPSSPQDSSSVLIESLTLSLNSPRPSSSSAPQDSVNPPELSNQQTWLLDPNYSIHKTNLHRSKTAPAMAAINDVKTHPSVTTQFGSQTIVRQAVILLVAYLMLGVAIYWFNRHEFSATETHPIVDGIYFCIVTMCTIGYGDIIPTGTATKLFSILFVLVGFGFIDILLSGMVSYVLDLQESYLLNTVKGREQKHSPPSYIIDVKKGRMRIRLKVALALGVVVLCIGIGIVVMHFVENFGWLDSLYLSVMSVTTVGYGDRAFKSMPGRIFASIWLLVSTLAVARAFLYFAEARVDKRHRRMVKWILGEDMTVSQFFAADIDNNGYVSKSEYVVYKLKEMGKVSEKDIMLISQNFDRLDTGNFGKITLADLMEHQHKS* 429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01088 428 Gene3D - 123 247 - -
Pte19g01088 428 MobiDBLite consensus disorder prediction 1 20 - -
Pte19g01088 428 Pfam Ion channel 272 342 IPR013099 -
Pte19g01088 428 Pfam Ion channel 147 227 IPR013099 -
Pte19g01088 428 SUPERFAMILY EF-hand 360 426 IPR011992 -
Pte19g01088 428 Gene3D - 335 428 - -
Pte19g01088 428 Gene3D - 271 334 - -
Pte19g01088 428 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 147 399 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte19g01088 428 FunFam Two-pore potassium channel 3 249 363 - -
Pte19g01088 428 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Pte19g01088 428 PRINTS Two pore domain K+ channel signature 184 212 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte19g01088 428 PRINTS Two pore domain K+ channel signature 304 313 IPR003280 GO:0005267|GO:0016020|GO:0071805
Pte19g01088 428 SUPERFAMILY Voltage-gated potassium channels 255 361 - -
Pte19g01088 428 SUPERFAMILY Voltage-gated potassium channels 138 227 - -
Pte19g01088 428 MobiDBLite consensus disorder prediction 74 94 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pte19g01088 Pte-Chr19 11253025 11257013 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01088 4 423 Ion Channels AT4G18160 62.162 0.0 510
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01088 K05389 - cave:132168548 583.948
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01088 19 11253025 11257013 Pte19g01088 19 11253025 11257013 RCT
Pte2g00948 2 9469413 9470787 Pte19g01088 19 11253025 11257013 RCT