Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01071 ATGCCTCGTAAAATTGGTCGCGGATTTGACTATGATGATAACGATTATGATGACTATGGAGGTTATGATTATGATTACGATGATGATAATTATCACCAGGAACAAGACGGAGCTGGGTCATCAAGGCAAGAGACCAGTAATTCAGAACTTTGGCGTTGCTCCATTTGCACTTATGATAATGATGATAGTATGACTGTTTGTGATGTTTGTGGGGTTCTGCGTTACCCGTTGGCTGCAAATGGTGCTCCAGGCAATAATCAAACTGCAAACCCTAATAACCTTAAAACAGCTCAAATCTCGTCAAGCGTCAAAGAGAAGAATGGCATGCCTCATCTGCAATCTAAAGTTGAAAAACCAGACAGCTCATCATTGTCGATGCCGAAAGGCAGAGACTGCAGTTCAGTTGACAGAAATGTTCCCAACAGAGCAGTTGAAACAAAAATGAATAAGAATATGGAAGGTTCATCAATGCCAACAGGAAGTAGTACGAAAGCATATGAAGAATCACTAGGTGGTACATCTTCATTGCGGAAAGGCAAAAACAGATTAGATGAGGTTGACTCTTCTACCATCGAAAAGGGAAAGCCTCAGAATCTAAATAGTAGTTTGAAGGACATGACTATGGACACCAGATCACGAATTTCAAAGAATGGTAACACAAAAGGTTCTAGTTCACAAGTGAATTATAAACCAGAAAAATGGATGCTTCCGCAGGATGCGGAAGATAAGTTTACTCAGCTGAATCTTGCAATTGTTGGTCATGTCGATTCAGGGAAATCTACACTCTCAGGTAGACTGCTTCACCTTTTGGGAAGAATTTCTCAAAAAGAAATGCACAAATACGAAAAAGAGGCTAAGTTACAGGGAAAGGGGTCCTTTGCTTATGCTTGGGCACTGGATGAGAGTACTGAAGAAAGGGAAAGAGGAATTACGATGACAGTTGCAGTTGCCTATTTGGACTCTAAGAAGTACCATGTCGTTCTGCTTGATTCTCCAGGGCATAAAGATTTTGTCCCGAACATGATATCTGGAGCAACACAAGCCGATGCTGCAATTCTTGTTATAGATGCTTCAGTTGGTTCATTTGAAGCTGGAATGGACGGAACCAAGGGTCAGACAAAAGAGCACGCACAACTCATCAGAAGTTTTGGGGTAGAGCAGATAATAATTGCAGTAAATAAAATGGATGTTGTGGCATATGCAAAAGATCGATTTGACTTAATTAAACAGCAACTTGGGGCATTTCTACGTTCTTGTGGTTTCAAAGATTCTTCTGTTTCATGGATACCAGTGAGTGCCATGGAAAATCAAAATTTGGTGGCAGCACCTGCTGATGTTCGTCTCAGATCCTGGTACCATGGACAACATCTCTTAGATGCAATTGATTCTCTCCAACCCCCTGCAAGAGAATACTCGAAGCCTCTGATCATGCCTGTTTGCGATGTTGTTAGATCAACAAGTCTTGGGCAGGTATCTGCATGTGGTAAACTGGAAACTGGAGCCCTTCGAAGTGGATCAAAGGTTCTGGTTATGCCTTCAACCGATGTATGCACGGTACGCTCATTAGAGCGTGACTCTCAAGCTTGTGCCATTGCAAGAGCTGGGGACAATGTTGCTGTCACATTACAGGGCATAGATGCAAATCAAGTCATGGCGGGAGATGTTCTATGCCACCCTGATTTTCCAGTTGCAGTCTCGAACCACCTAGAACTGAAAGTTCTTATATTGGATGTGGCCACACCTATATTGATTGGCACTCAGTTGGAGTTGCACATTCACCATGCCAAAGAGGTAGCTAGATTGTCAAAGATATCGTCCTTACTTGACCCCAAGACAGGAAAAGCGACCAAGAAGGCCCCGCGTTGTCTAACTGCAAAGCAGAGTGCAGTGGTTGAGGTGATCTTGCAAGCATCCGTATGCGTGGAAGAGTTCTCAAAAGTTAGAGCTCTTGGGAGGGTCTTCTTGAGAACAGCAGGCAGAACAATTGCCGTTGGCATTGTTACTAGGATCATGTCAGAGCAAGATTAG 2028 0.4305 MPRKIGRGFDYDDNDYDDYGGYDYDYDDDNYHQEQDGAGSSRQETSNSELWRCSICTYDNDDSMTVCDVCGVLRYPLAANGAPGNNQTANPNNLKTAQISSSVKEKNGMPHLQSKVEKPDSSSLSMPKGRDCSSVDRNVPNRAVETKMNKNMEGSSMPTGSSTKAYEESLGGTSSLRKGKNRLDEVDSSTIEKGKPQNLNSSLKDMTMDTRSRISKNGNTKGSSSQVNYKPEKWMLPQDAEDKFTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESTEERERGITMTVAVAYLDSKKYHVVLLDSPGHKDFVPNMISGATQADAAILVIDASVGSFEAGMDGTKGQTKEHAQLIRSFGVEQIIIAVNKMDVVAYAKDRFDLIKQQLGAFLRSCGFKDSSVSWIPVSAMENQNLVAAPADVRLRSWYHGQHLLDAIDSLQPPAREYSKPLIMPVCDVVRSTSLGQVSACGKLETGALRSGSKVLVMPSTDVCTVRSLERDSQACAIARAGDNVAVTLQGIDANQVMAGDVLCHPDFPVAVSNHLELKVLILDVATPILIGTQLELHIHHAKEVARLSKISSLLDPKTGKATKKAPRCLTAKQSAVVEVILQASVCVEEFSKVRALGRVFLRTAGRTIAVGIVTRIMSEQD* 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01071 675 SUPERFAMILY Ran binding protein zinc finger-like 47 74 IPR036443 -
Pte19g01071 675 Gene3D Translation factors 566 675 - -
Pte19g01071 675 SMART zf_4 49 73 IPR001876 -
Pte19g01071 675 ProSitePatterns Zinc finger RanBP2-type signature. 51 70 IPR001876 -
Pte19g01071 675 Gene3D Translation factors 472 561 - -
Pte19g01071 675 FunFam Elongation factor 1 alpha-like protein 237 468 - -
Pte19g01071 675 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 244 469 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 MobiDBLite consensus disorder prediction 1 44 - -
Pte19g01071 675 SUPERFAMILY Translation proteins 466 561 IPR009000 -
Pte19g01071 675 Pfam Elongation factor Tu C-terminal domain 566 670 IPR004160 -
Pte19g01071 675 CDD HBS1-like_II 474 558 - -
Pte19g01071 675 FunFam Translation elongation factor EF-1 471 561 - -
Pte19g01071 675 Pfam Elongation factor Tu domain 2 495 557 IPR004161 GO:0005525
Pte19g01071 675 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 567 670 IPR009001 -
Pte19g01071 675 FunFam elongation factor 1-alpha isoform X4 565 674 - -
Pte19g01071 675 PANTHER TRANSLATION FACTOR 238 671 - -
Pte19g01071 675 Gene3D - 235 468 IPR027417 -
Pte19g01071 675 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 489 IPR027417 -
Pte19g01071 675 MobiDBLite consensus disorder prediction 144 176 - -
Pte19g01071 675 PRINTS GTP-binding elongation factor signature 343 354 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 PRINTS GTP-binding elongation factor signature 327 337 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 PRINTS GTP-binding elongation factor signature 307 315 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 PRINTS GTP-binding elongation factor signature 248 261 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 PRINTS GTP-binding elongation factor signature 388 397 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 MobiDBLite consensus disorder prediction 105 203 - -
Pte19g01071 675 CDD EF1_alpha 248 467 - -
Pte19g01071 675 Pfam Elongation factor Tu GTP binding domain 247 464 IPR000795 GO:0003924|GO:0005525
Pte19g01071 675 CDD HBS1_C_III 562 670 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01071 Pte-Chr19 10732506 10742994 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01071 50 673 Eukaryotic Initiation Factors Gene Family AT5G10630 62.282 0.0 790
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01071 K14416 - qsa:O6P43_012867 865.144