Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01066 ATGGCGTACACAAGCCAATCCATGTCAGTCTCTCCTCAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATTGAGAACACAACCAATCGTCAAGTGACTTTTTGCAAGCGCAGGAATGGCTTGTTGAAGAAAGCATATGAGTTATCTGTGCTATGCGATGCTGAAGTTGCTCTAATAGTCTTCTCTAGCAGAGGCCGTCTTTATGAATATGCTAATAACAGTGTGAAAGCAACTATTGAGAGGTACAAAAAAGCAAGCACAGACGCTTCTGGTACTGGGTCAGTTTCTGAGGTGAATGCCCAGCATTACCAACAAGAAGCTGGTAAACTTCGAGTACAAATTGCAAATCTTCAGAACAATATCGGACAAATGCTGGGTGAAAATCTAAGCTCTATGAATGCGAAGGATCTGAGAAGCATGGAGACCAAACTAGAAAAAAGCATTGGCAAAATTCGGTCTAAAAAGAATGAACTGCTGTTTGCAGAGATTGAGTTCATGCAGAAAAGGGAAATAGAGTTGCACAACAATAACCAGCTTCTCCGAGCAAAGATAGCTGAAAATGAAAGGACCAATCAGAACATCAATGTGATGCCCGGAGGGAGTAACTACGAACATGTCCATTCTCAATCATTTGACAATCGAAATTACTTCCAATTAATGTGA 669 0.4126 MAYTSQSMSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKASTDASGTGSVSEVNAQHYQQEAGKLRVQIANLQNNIGQMLGENLSSMNAKDLRSMETKLEKSIGKIRSKKNELLFAEIEFMQKREIELHNNNQLLRAKIAENERTNQNINVMPGGSNYEHVHSQSFDNRNYFQLM* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01066 222 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g01066 222 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Pte19g01066 222 CDD MADS_MEF2_like 17 88 IPR033896 GO:0000977|GO:0045944
Pte19g01066 222 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 Coils Coil 139 159 - -
Pte19g01066 222 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g01066 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 16 180 - -
Pte19g01066 222 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 Gene3D - 28 98 IPR036879 GO:0003677|GO:0046983
Pte19g01066 222 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Pte19g01066 222 Coils Coil 102 122 - -
Pte19g01066 222 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Pte19g01066 222 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01066 Pte-Chr19 10560833 10568525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01066 14 221 MADS-box Gene Family AT3G58780 64.815 2.30e-93 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte19g01066 K-box 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01066 K09264 - qsa:O6P43_012856 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01066 19 10560833 10568525 Pte19g01066 19 10560833 10568525 RCT