Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01056 ATGGCTGACGTCTCTGTCGTTTTGAGTGTCAAAGATGACGATACCAACCAAGAGTCTTCCATCCATTTGATTGCAGAAGTTTTGGGCACTTACTTTCTCATATTCGCTGGTTGTGGCTCAGTGCAAGTGAACAAGGGCAATGATAATGTACTGACACATCCAGGAGTTGCATTCACTTGGGGTTTGGTTGTAGTAGTGTCGGTTTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAACCCAGCTGTCACCATTGCTTTTGCATCTACCAAAAGATTTCCATGGAAACAGGTTCCGGCGTATGTTACAGCCCAAGTATTTGGATCAACCCTAGCAAGTGGAACCCTGAGATTGCTATTCCAAGGAAAGCAATATCAGTTCACAGGAACAGTCCCAAGTGGATCCGAGTTGCAGTCTTTTGTTATTGAATTCATAATCACATTCTACCTTATGCTTGTCATATCTGGTGTTGCTACAGACAGTAGAGCAGTTGGAGGGTTTGCTGGACTTGCTGTTGGATGTACTATTCTGCTGAATGTGATGTTTACAGGACCCATTACAGGGGCATCCATGAATCCAGCAAGAAGCTTAGGGCCAGCTTTTGTGTCAAACCAATATAGGGGAATATGGGTATACTTGGTGGCACCGACTGCTGGTGCTGTAGCAGGGGCTTGGGCCTATAATACTCTCAGGTCTGCTGATAAGTCATTGCTCTAG 717 0.4533 MADVSVVLSVKDDDTNQESSIHLIAEVLGTYFLIFAGCGSVQVNKGNDNVLTHPGVAFTWGLVVVVSVYSLGHISGAHFNPAVTIAFASTKRFPWKQVPAYVTAQVFGSTLASGTLRLLFQGKQYQFTGTVPSGSELQSFVIEFIITFYLMLVISGVATDSRAVGGFAGLAVGCTILLNVMFTGPITGASMNPARSLGPAFVSNQYRGIWVYLVAPTAGAVAGAWAYNTLRSADKSLL* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01056 238 PANTHER AQUAPORIN NIP2-1 22 234 IPR034294 -
Pte19g01056 238 Pfam Major intrinsic protein 22 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 60 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 173 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 142 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 PRINTS Major intrinsic protein family signature 210 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 CDD MIP 24 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 NCBIfam MIP family channel protein 25 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pte19g01056 238 Gene3D Glycerol uptake facilitator protein. 6 236 IPR023271 -
Pte19g01056 238 SUPERFAMILY Aquaporin-like 22 231 IPR023271 -
Pte19g01056 238 ProSitePatterns MIP family signature. 78 86 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01056 Pte-Chr19 10343850 10345063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01056 9 237 Major Intrinsic Protein MIP AT5G37820 56.250 3.45e-88 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01056 K09874 - aew:130754873 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01056 19 10343850 10345063 Pte19g01056 19 10343850 10345063 RCT