Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01051 ATGGATGAAGGCCAAGGTAGTTCAAGTTCCCTGCCTCCTTTCCTTACCAAGACTTATGAAATGGTGGATGACCCTTCTACAGATTCCATTGTTTCCTGGAGCTCAAGCAGCAAAAGCTTCATCGTGTGGAATCCACCCGAGTTCTCCCGGGATTTACTTCCCAGATACTTTAAGCACAATAATTTCTCAAGTTTCATCAGACAGCTTAATACATATGGTTTTAGAAAAATTGATCCAGAACAATGGGAGTTTGCTACTGAAGATTTTATAAGGGGTCAACCTCAGCTTTTGAAGAACATCCACAGGCGTAAACCAGTTCATAGCCATTCTCTACAGAATTCCCAAAGTTCTTCTTCATTGAGTGCAACAGAACGAAAGAGTTTGAAGGATGAAATTGAGAGACTTAAACATGAAAAGGAACGACTCGTTCTAGAGTTACAAAGGCATGGACAGGAGCATCTAGCATTTGAGTTACAAATACAGCACTTGAAAGAGCGTCTGCAAATCATGGGAAGGCGGCAGCAAACTCTTGTCTCTTCTGTTTCTCGGGCATTGCATGAACCTAGTGTTGAATTAAATTTATTGCCACAGTTTGAAACAATTGAGAGAAAGAGAAGACTGCCCAGAGGTGGTTATCTTTGTGAAGAAGATAGTTGTATGGGGACTTCTCAAGTAGTCCCTGTAGAGAATTCAGACAGATTGTCAGTTTTCACGTCAAGCAAAGAACAATTGGATCATCTGGAATCATCTGTTCTATTTTGGGAGAATATTATACAAAATGTTGGTCAAACTTTTATGCAGACTAGTCCTAGCTCAGATTTGGATGAATCTACGGGTTGTGCTGAAAGTCCAGCAATTTCTGTTACACATATGAGAATTGAAGTTAGGCCCAAATCGCCTGGGATTGATATGAACTTGGAGCCAGTGCCTGCTGTTGGTTCTTCTTCTGAACCTGTCACCTCAAAAGAACAAGTTGCTGGAACAATTACTAATGTTTCAACTGGGGTTAATGATGTGTTTTGGGAGCAATTCTTGACCGAGAATCCTGGTTCATCTGAAGCACAAGAAGTTCAGTCAGAAAGAAAGGATGTTAAAAACAGTGACGGTGGAAGGTTTTGGTGGAATATGAGGAATGTAAATAATCTTGCAGAACAGATGGGACATCTTTCTCAAGCAGAAAAAACTTAG 1188 0.4057 MDEGQGSSSSLPPFLTKTYEMVDDPSTDSIVSWSSSSKSFIVWNPPEFSRDLLPRYFKHNNFSSFIRQLNTYGFRKIDPEQWEFATEDFIRGQPQLLKNIHRRKPVHSHSLQNSQSSSSLSATERKSLKDEIERLKHEKERLVLELQRHGQEHLAFELQIQHLKERLQIMGRRQQTLVSSVSRALHEPSVELNLLPQFETIERKRRLPRGGYLCEEDSCMGTSQVVPVENSDRLSVFTSSKEQLDHLESSVLFWENIIQNVGQTFMQTSPSSDLDESTGCAESPAISVTHMRIEVRPKSPGIDMNLEPVPAVGSSSEPVTSKEQVAGTITNVSTGVNDVFWEQFLTENPGSSEAQEVQSERKDVKNSDGGRFWWNMRNVNNLAEQMGHLSQAEKT* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01051 395 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 MobiDBLite consensus disorder prediction 109 123 - -
Pte19g01051 395 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Pte19g01051 395 MobiDBLite consensus disorder prediction 299 322 - -
Pte19g01051 395 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 4 239 IPR027725 -
Pte19g01051 395 FunFam Heat shock transcription factor 1 7 104 - -
Pte19g01051 395 Gene3D - 6 104 IPR036388 -
Pte19g01051 395 MobiDBLite consensus disorder prediction 349 370 - -
Pte19g01051 395 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pte19g01051 395 MobiDBLite consensus disorder prediction 104 125 - -
Pte19g01051 395 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01051 Pte-Chr19 10264590 10267123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01051 1 396 HSF AT4G18880 53.398 7.00e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pte19g01051 HSF_DNA-bind 5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01051 K09419 - zju:107412425 498.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01051 19 10264590 10267123 Pte19g01051 19 10264590 10267123 RCT
Pte19g01051 19 10264590 10267123 Pte2g00907 2 8440037 8441325 RCT
Pte2g00907 2 8440037 8441325 Pte19g01051 19 10264590 10267123 RCT