Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01042 ATGGTAACTTTTATCAGGACAGATTGGCTTTGGACTGTGCTGCACTTTGTCATGGTTAGCATGCCAAAGTCATTTTTTCGAGGAAGTTTCTTGATTATGGAGCATAAAGAAACTGGATTACAGGCAGCTCCTGAAGCCCCTAGACTTTGTGTCAATAATTGTGGATTTTTTGGGAGCCCAGCAACCATGAATTTGTGTTCCAAGTGTCACAAAGACATGTCAGTCGAGCAACAACAGGCTGAACTAGCTGCATCTTCCTTTGGAAGCATTGTGAATGGCAATCCCAGTGACTGTGGTAAGGAGCCCGTAGCATGTCCTGATGTACAAGCTGGTACAGGAGGCTCTGTTATGATCTCAAATCAGGTGTCATTTACTTCTGCATTAGACAGAAAATGTGAACAAACGATGGAAGAGAGTCCAAAAACAAATAGGTGTAACACTTGCCAGAAACGCGTAGGTCTTACTGGGTTCATTTGCAAATGTGGAAATCTCTTCTGTTCAGCTCATCGCTACTCTGAAAAACATGATTGCCCATATGATTACCGTGCTGCTGCCAAAGCTGTTATTGCAAAAGCCAATCCTCTAGTTAAGGCTGATAAATTGGATAAAATTTGA 615 0.4228 MVTFIRTDWLWTVLHFVMVSMPKSFFRGSFLIMEHKETGLQAAPEAPRLCVNNCGFFGSPATMNLCSKCHKDMSVEQQQAELAASSFGSIVNGNPSDCGKEPVACPDVQAGTGGSVMISNQVSFTSALDRKCEQTMEESPKTNRCNTCQKRVGLTGFICKCGNLFCSAHRYSEKHDCPYDYRAAAKAVIAKANPLVKADKLDKI* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01042 204 Gene3D - 119 200 IPR035896 -
Pte19g01042 204 Pfam A20-like zinc finger 48 71 IPR002653 GO:0003677|GO:0008270
Pte19g01042 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 49 85 - -
Pte19g01042 204 Gene3D - 33 92 - -
Pte19g01042 204 PANTHER AN1-TYPE ZINC FINGER PROTEIN 45 204 - -
Pte19g01042 204 FunFam Zinc finger AN1-type containing 6 119 200 - -
Pte19g01042 204 ProSiteProfiles Zinc finger A20-type profile. 44 78 IPR002653 GO:0003677|GO:0008270
Pte19g01042 204 SUPERFAMILY AN1-like Zinc finger 134 199 IPR035896 -
Pte19g01042 204 ProSiteProfiles Zinc finger AN1-type profile. 139 185 IPR000058 GO:0008270
Pte19g01042 204 Pfam AN1-like Zinc finger 145 181 IPR000058 GO:0008270
Pte19g01042 204 SMART A20_3 47 71 IPR002653 GO:0003677|GO:0008270
Pte19g01042 204 SMART AN1_Zf_4 145 182 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01042 Pte-Chr19 10062151 10064758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01042 44 205 C2H2 Transcription Factor Family AT3G52800 44.512 1.93e-35 121