Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01020 ATGGATCAGGAAAGAATGCAAGGTAAAGATGAGTGCTTGGGTAATCTTGACCAAAAGGTGGATGAGAATTTGAGTAAAGCTGCTAATGGGATTGCTGCTTATGCCGCCATTGTTAGTATTTCAGGTGAAAAAGCCGGTTGTAGCATTTTAAATAGGAGTTTGGGAGCAATGGACAATGAACTGGAGTTGAATAACAGATTAGAGGATGAGATTGAAAAGATTGAGGTTCAGCACGTGCATGATCAAGAAGCCACCTATGAGACATTGGAAAGCATTGATCAAGGAACTAGCTATAGTGCTGAGAATTCGGTTGATGGTGTTCCACATGAGACTGTGATTGCACTAGGTTCAGCTCAGGTGCAGAGTCTGGCCGTGACTGTGGATCCAGGAAATAAGAAGCTTGATGTCGAGGATGGAAAATCAGGATTGAGTATGAATAAAGAACCAAAGAAAAAGCTGCCTGAAACACGTAAGGATTCATGCTTCATTGATTTAAATTGTGAAACAGATGGAGTTGGTGAAGATGGAGAAAAGGTTTGTAGGATCTGCCATCTGAGTTCTGGGCCAGCTGAAGTATCAGGCGATAATTCTACCATTCTGACTGGAGAAGATTTGATCCAGCTTGGTTGTGTTTGTAAAGATGAGCTAGGTATTGCTCATACTCAATGTGCTGAGGTGTGGTTTAAGCTAAAAGGCAACAGTAATTACAGGTTATGTGAAATATGTGGTGAGACAGCAAAAAATGTTGTAGAAGTTGGGAATGACAGTTATATGGAAGCCTGTAACGAATGGAGAATGGTCAGTACCAATAGCAACTCATTAGGAAGGGAAGGTCGATGTTGGCGGGGTCAGCCATTTTGTAACTTCTTAATGGCCTGCTTGGTAATAGCTTTTGTGCTTCCATGGTTTTTCCGCGTAAATATGTTTTAG 930 0.4151 MDQERMQGKDECLGNLDQKVDENLSKAANGIAAYAAIVSISGEKAGCSILNRSLGAMDNELELNNRLEDEIEKIEVQHVHDQEATYETLESIDQGTSYSAENSVDGVPHETVIALGSAQVQSLAVTVDPGNKKLDVEDGKSGLSMNKEPKKKLPETRKDSCFIDLNCETDGVGEDGEKVCRICHLSSGPAEVSGDNSTILTGEDLIQLGCVCKDELGIAHTQCAEVWFKLKGNSNYRLCEICGETAKNVVEVGNDSYMEACNEWRMVSTNSNSLGREGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01020 309 Pfam RING-variant domain 180 242 IPR011016 GO:0008270
Pte19g01020 309 SUPERFAMILY RING/U-box 176 245 - -
Pte19g01020 309 PANTHER ZINC FINGER, RING-CH-TYPE 99 309 - -
Pte19g01020 309 SMART ringv_2 179 243 IPR011016 GO:0008270
Pte19g01020 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 247 IPR013083 -
Pte19g01020 309 Coils Coil 57 84 - -
Pte19g01020 309 ProSiteProfiles Zinc finger RING-CH-type profile. 172 249 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01020 Pte-Chr19 9664780 9667362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01020 177 308 C3H Transcription Factor Family AT5G05830 43.066 6.78e-25 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01020 - - gmx:100791129 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g01020 19 9664780 9667362 Pte19g01020 19 9664780 9667362 RCT