Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g01001 ATGGTGATTTACTCTCAAAACTCAAATACTTCACCTGGGTCTGACATTACAAGGGTGTTTGATGAGTCCTTAAACAAACCATTTATTAGTGTTAATGCCGTTCCCCAAGGTGGGTCTGTGTCATCGGAGTCTTTAGTTCTGGACAGTGAGAAGAGAAAGCCTGTTAAGACCTCTGCAAAGGTGGGAAAGAAATATGTACTAGAGGCTAAAGCTATGGCAGCTCTGAGGAGTCACAGTCAGGCAGAGAAAAGAAGAAGAGAGAGAATAAATGGCCATCTTGATACCCTTAGAGGCCTTGTACCCTGTACTAAAAAGATGGATAAAGCCTCATTACTTACCGAAGGTATAGAGCAAGTGAAAGAACTGAAGAGGAAAGCAATGGAAGCAACCAGAGGTCTGTTAGTCCCTATGGATACAGATGATGTCAAAGTTGAACCATATGATGATGGGGGAGACGGGCCAAGGTCCTTTTCTGCATCCCTGTGCTGTGATTATGGACCTGAGATTCTATCTGACCTAAGAAAGACCATGGATGCCCTTCATTTGGATATTATACAAGTAGAAATATCAACTTTAGGATGCAGGCTGAAGTTCGCCTTTGTCTTCACTTGCTGCAAAGGTGATACTGTTCACATAGGGGCATGCCAATTGCTTGCTACCACAGTTCAAGAGGCCTTGCGTTCTGCGCTAGATAGGGCTTCTTCGAATGCACTACTTTGCCCTCTACAAGAACAATGTGTAGGGAAAAGGCGCAAAATTTGTAATTCTGACCCTGGAACTTCATCTGTATGCAACCATTCTTGTACCTGTTCATGTTGA 819 0.4347 MVIYSQNSNTSPGSDITRVFDESLNKPFISVNAVPQGGSVSSESLVLDSEKRKPVKTSAKVGKKYVLEAKAMAALRSHSQAEKRRRERINGHLDTLRGLVPCTKKMDKASLLTEGIEQVKELKRKAMEATRGLLVPMDTDDVKVEPYDDGGDGPRSFSASLCCDYGPEILSDLRKTMDALHLDIIQVEISTLGCRLKFAFVFTCCKGDTVHIGACQLLATTVQEALRSALDRASSNALLCPLQEQCVGKRRKICNSDPGTSSVCNHSCTCSC* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g01001 272 SMART finulus 79 128 IPR011598 GO:0046983
Pte19g01001 272 Pfam Helix-loop-helix DNA-binding domain 77 122 IPR011598 GO:0046983
Pte19g01001 272 Gene3D - 69 131 IPR036638 GO:0046983
Pte19g01001 272 CDD bHLH_AtAIG1_like 68 146 - -
Pte19g01001 272 PANTHER TRANSCRIPTION FACTOR BHLH30 39 255 IPR045847 GO:0003700|GO:0006355
Pte19g01001 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 126 IPR036638 GO:0046983
Pte19g01001 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g01001 Pte-Chr19 9209402 9211992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g01001 70 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 41.071 3.87e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte19g01001 HLH 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g01001 - - qsa:O6P43_031931 285.419