Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00999 ATGGATCTCTCCAACCCTAAGAAACGCAAAACCGAAGAAGAAAACGGCACTGCCACCGTTTTGACCCCGCCTGGCGTCGCCACGGCCACCAACCTGTACGGCGCACTCTCGCCCGACGACATTCGAAAGATCCTTCTACCCTTCACCCGCGACCAGCTTCTTGACCTTCTTCAATCCGCCACCCTCCGCCACACCGACGTTCTGGACGCCGTTCGATCCGTTGCCGACAGTGACACCACCACCCGTAAGCTCTTCGTTCGTGGGCTGTCAGGCGAGACGACTACGGAAACCCTTCGTTCTGTTTTCTCCGCCTTCGGTGAACTCGAGGAAGCTATTGTTATTATGGACAAGAATTCTGGAAAGTCTAAAGGTTACGGTTTTGTCACTTTTAAACATGTGGACGGTGCGGTTGTGGCTCTTAAAGAACCTAGTAAGAAAATTGATGGTAGAATGACTGTGACCCAGTTGGCTGCTGCTGGGTTATCAGGCGGGTCAGGAGGAAATTCTGGTCATGGAGGCGGCATGGGCTCGTCGGCTGATGTATCGGCGAGGAAGATTTTTGTTGGAAACGTACCGTTTGATTTGTCATCCGAGAAGTTGTTGAGCCACTTTGCTATGTACGGTGAAATTGAAGAAGGACCACTTGGGTTTGATAAAAGTAGTGGGAAATCCAAAGGGTTTGCTTTCTTTGTGTACAAGACTGAAGAAGATGCAAGGGCTGCATTGGCAGAGCCCATGAAGACAGTTGATGGCCATCAATTAATCTGTAAGTTAGCTTTGGATAATAAGAAAGCTAAGCAAGGCGTTTCTCAGAATGAAGCTCGAACAGGTTTTGGTGGGAATGTCATGCCACCTCAGCTTCCACCAATAGGTGGTTATCCTAATTCAATGATGGGACCCCAGTATGGAGCAGGGCATGGAGGATTGTCATCTTATGGGGGATATGGTGCTGGGCATCAGGGTCAACCACCGATAGCTGGTGGCAATACTTACGGGTTGCAGTCTATATACGGGCCTCAAGTTCAATCTTCTTTTAATGCTACTAATGGTGCGTATGGTGGTTCACAATATGGTGGACCTGTCTCTGGTGAGTTTGGGGCAAAACCCCCAGCTTCTGTTGGGTATGCTGATGGTGCACGTTATGGTTATGCATCTTCAGTCATTCCCGGACAGCAGCAACCTGTGTCACAGTTACCGAGACTTCCACCTGGTGGAATGTATCAAGGGATGCCTCCGTATTAA 1242 0.4952 MDLSNPKKRKTEEENGTATVLTPPGVATATNLYGALSPDDIRKILLPFTRDQLLDLLQSATLRHTDVLDAVRSVADSDTTTRKLFVRGLSGETTTETLRSVFSAFGELEEAIVIMDKNSGKSKGYGFVTFKHVDGAVVALKEPSKKIDGRMTVTQLAAAGLSGGSGGNSGHGGGMGSSADVSARKIFVGNVPFDLSSEKLLSHFAMYGEIEEGPLGFDKSSGKSKGFAFFVYKTEEDARAALAEPMKTVDGHQLICKLALDNKKAKQGVSQNEARTGFGGNVMPPQLPPIGGYPNSMMGPQYGAGHGGLSSYGGYGAGHQGQPPIAGGNTYGLQSIYGPQVQSSFNATNGAYGGSQYGGPVSGEFGAKPPASVGYADGARYGYASSVIPGQQQPVSQLPRLPPGGMYQGMPPY* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00999 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 272 IPR000504 GO:0003723
Pte19g00999 413 MobiDBLite consensus disorder prediction 1 15 - -
Pte19g00999 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 254 IPR000504 GO:0003723
Pte19g00999 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 150 IPR000504 GO:0003723
Pte19g00999 413 PANTHER GEO13361P1-RELATED 178 353 - -
Pte19g00999 413 MobiDBLite consensus disorder prediction 392 413 - -
Pte19g00999 413 Gene3D - 69 178 IPR012677 -
Pte19g00999 413 SUPERFAMILY RNA-binding domain, RBD 75 176 IPR035979 GO:0003676
Pte19g00999 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 159 IPR000504 GO:0003723
Pte19g00999 413 SMART rrm1_1 83 155 IPR000504 GO:0003723
Pte19g00999 413 SMART rrm1_1 185 257 IPR000504 GO:0003723
Pte19g00999 413 Gene3D - 179 283 IPR012677 -
Pte19g00999 413 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g00999 413 FunFam UBP1-associated protein 2C isoform A 65 168 - -
Pte19g00999 413 SUPERFAMILY RNA-binding domain, RBD 180 275 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00999 Pte-Chr19 9186758 9192731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00999 180 259 C2H2 Transcription Factor Family AT2G19380 40.000 9.45e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00999 K12741 - zju:107411269 399.438