Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00987 ATGGTTTTAGCATCGGAAAGCGAAAACCAAACTGATCAGCTCCCATTCAACGAGAATGACTCACAAGACATGGTCATATTCCAAGTCCTCAACGAGGCTAATGCCCTTGCAAACACATACATACAACAAAGACGACAGCAAATTACTCCACATCATCATGGCCTTGAGGTGAACAGAAACGTTGGGAAGAAGCACTATAGAGGTGTGAGGCGTCGGCCATGGGGGAAATACGCGGCGGAGATTCGTGATTCTGCGCGGCATGGTGCACGGGTATGGCTAGGCACGTTTGTTACAGCTGAAGAAGCTGCTTTGGCTTATGATAGAGCTGCTTTCAAGATGAGGGGAGCTAAGGCCCTTCTTAACTTTCCAGCTGAACTTGTGGCTGCTTCTTCCCTACAAATATTACCACCAAAACTGAGCTTGCAGAATTCGAACCGCCTCGAGTCTGATTCAAGTGGAAGCAGCTCTAGCACACATCGGATTTCGTCAGCTGGCTCACCATCAGAAGAAGCAATTATCCCAACAGCGACATTGCAGCCTTTTTGA 546 0.4799 MVLASESENQTDQLPFNENDSQDMVIFQVLNEANALANTYIQQRRQQITPHHHGLEVNRNVGKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFVTAEEAALAYDRAAFKMRGAKALLNFPAELVAASSLQILPPKLSLQNSNRLESDSSGSSSSTHRISSAGSPSEEAIIPTATLQPF* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00987 181 MobiDBLite consensus disorder prediction 143 181 - -
Pte19g00987 181 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 PANTHER DNA-BINDING DOMAIN 45 154 IPR044808 GO:0003700|GO:0009873
Pte19g00987 181 SMART rav1_2 65 129 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 FunFam Ethylene-responsive transcription factor 2 64 125 - -
Pte19g00987 181 ProSiteProfiles AP2/ERF domain profile. 65 123 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 CDD AP2 64 124 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 SUPERFAMILY DNA-binding domain 65 125 IPR016177 GO:0003677
Pte19g00987 181 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Pte19g00987 181 Gene3D AP2/ERF domain 64 125 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00987 Pte-Chr19 8893159 8894280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00987 14 134 AP2-EREBP Transcription Factor Family AT3G23240 54.545 2.50e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte19g00987 AP2 1.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00987 K13433 - qsa:O6P43_012708 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00987 19 8893159 8894280 Pte19g00987 19 8893159 8894280 RCT