LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00983	ATGTCTAGAATAATGGATAAAAGGATTCAAGTGCTTCTTCTTACCCTTTTCTTCAAGTTCCTGGTTGTAGCAACTCAGAACACAGATCCTCAAGACTTTGCTGCCTTAAGGGGTCTAATGGATAATTGGCAAAATACGCCACCAGATTGGGTCGGTACAGATCCTTGTGGCAGTAAATGGACAGGGATCAGCTGCACGAATTCAAGGGTGACGTCCATGACACTGTCAAACATGAACTTGAAGGGTACACTGTCTGGAGATATCCTGAAACTGACCCAATTACAAACTCTTGATCTTTCTAGCAATGAGGCTCTTGGAGGAGCACTGCCAGCAGCAATTGGACGTTTGACAAATCTGGCTACCTTAGCCCTGGTTGGATGCAAATTCAACGGCCCTATTCCAGATTCAATTGGATCTTTAAAAAAGTTGACCTTTCTAGCTCTTAATTCTAATGGATTTAGCGGACTGATTCCTCCAAGCATAGGCAATCTTACCAATCTTAGTTGGCTTGATCTTGCTGACAACCAACTTGAAGGACCTATCCCAGTATCTAACAGAACTTCACTTGGTCTCGATATGCTGGTTAACACACTGCACTTTCATCTTGGAAACAATAAGCTCTCGGGAGAAATTCCAGATAAACTCTTCAGTTCAGATATGAGTCTAATTCATGTGCTCTTTGACAGCAACCAGTTATCTGGGACCATTCCCCAGACCATAGGACTTGTTAAGACATTGGAAGTGGTGCGCTTGGATAGGAACCAATTGAGTGGGGCAGTGCCTTCTAATATGAATAGGCTTTCTGCTCTTACTGAACTTTACTTGTCAAACAATAATTTCAATGGATCAATACCTGACCTAAGTGACATGAACCAGCTCATTTATGTGGACATGAGTAACAATACATTCAATGCATCTACTATACCGTCATGGTTTTCAACCTTGCAGTCTATGACAACATTAATGATGGAGAACACAGGACTGCAAGGGCCAATTCCTGTTTCCTTATTCAACCTTTCAAATTTGCAATCTGTAGTGTTGAGGAACAACAAGCTCAGTGGTTCTGTGGACATTGGTACTGCCTATAGCAGCCAGTTACAACTTATCGATTTGCGGGGCAATTCAATCACTGAATTGAAGCAAAAAACAACCAATATTACGATAACACTGTTTGGAAACCCAATGTGTTTGGAAACAGGAGTGTCATCCCAAAGTTACTGTCAAGACACAAAACCAACATACTCATACTCAACACCATCTAACTGTGGAACGGTTCCCTGCAACTCCAATCAGATTTCGAGTCCTAACTGTAAATGTGCATATCCATACACAGGAACTTTGTTCTTCAGGGCTCTTGGTTTCTCCAACCACGATAACTCAAGCTACTATGTTGCTCTTCAGCAGTCTCTCATGAAAACTTTTCAGTCCCAAAATAATCTACCCGTGGATTCAGTTGCACTCACAAATCCTTTCAAGAATGATCTTGATTATTTTGGAGTAACCCTTCAAGTTTTTCCTTCCCAAGTAGATCGTTTTAATAGAACAGCAGTATCGACTGTTGCTTTTGTTCTCAGCAACCAAATTTTCAAACCTCCAGAAGTATTTTCACCTTACTACTACATTGGAAGCAATTATGAAAACTTTCTAGGAGAACTTTCAGGGTCAACAAAATCATCAAACAAAGGAGTTATAGCTGGTGTAGTAGTTGGTGGTACCATCCTTCTGCTATTAGTAATTGTTCTGGGGGTATATGCATTCCGACAAAAGAGAAATAATCAACAATCTATGGAACTGAACCCTTTTGTACACTGGAATTCAGACGACAACAATGGCAATGCTCCTCAGTTAAAAGCTGCAAGATGGTTTTCATTTGAAGAACTTAAGAGATACACCAATAATTTTTCAGACGAAAATGACATTGGGGCTGGGGGATACGGCAAGGTTTATAGTGCTACACTTCCAACTGGTGAAGCAGTTGCGATTAAACGAGCTCGGAAAGAATCCATTCAAGGTGCACATGAATTCAAAACTGAGATTGAACTTCTCTCAAGAGTCCATCACAAGAATCTTGTCAGCCTTAAGGGTTTTTGCTTTGAGAAAGGTGAACAGATTCTGGTATATGAATACATTCCAAATGGTACCCTAATGGAGGCTATCCTAGGAAAATCTCAGGTTAAATTGGACTGGGTGAGGAGGTTAAGAGCGGCACTGGGAGCAGCCAGAGGCCTAGCTTATCTTCATGAACTTGCTAACCCACCAATCATACATAGGGATGTGAAGTCAGGCAATATCCTTCTTGATGAGCACCTAAATGCGAAAGTTGCTGATTTTGGATTGTCCAAGCCTCTTACTGACACTGAAAGAACACATGTTACTACTCAAGTTAAAGGGACAATGGGATACATGGACCCTGAATATTACATGACAAATCAGTTGACTGATAAGAGTGACGTTTATAGCTTTGGAGTGGTGTTACTGGAGCTGGTTACAGGAAGAAAACCTATAGAGCATGGAACATATATTGTGAGAGAGGTCTCAAATGCAATGGATCGGTCCAAAAATCTGTACAACCTTCACGATGTCATAGACCCTTACATAAGAACATCAGACTTGAAAGGCTTAGAGAGATTTGTTGATCTAGCAATGAGCTGTGTCAATGAGTCTGCAGCAAAGAGGCCTTCAATGGCTGAGGTGCTCAAAGAAATTGAGGATATAATTCAGCTTATGGGATTGACCCCTAGTAGTATTGTGGAATCAACATCAACATCTGAAAGAAACTATAAAGTGGCATCCATTGATGATATTATCAATGATTCTCATCAAGATTTCAGTTATAGCGGGGTTTTTCCATCAAGAAAGGTAGAACCTCATTGA	2874	0.4078	MSRIMDKRIQVLLLTLFFKFLVVATQNTDPQDFAALRGLMDNWQNTPPDWVGTDPCGSKWTGISCTNSRVTSMTLSNMNLKGTLSGDILKLTQLQTLDLSSNEALGGALPAAIGRLTNLATLALVGCKFNGPIPDSIGSLKKLTFLALNSNGFSGLIPPSIGNLTNLSWLDLADNQLEGPIPVSNRTSLGLDMLVNTLHFHLGNNKLSGEIPDKLFSSDMSLIHVLFDSNQLSGTIPQTIGLVKTLEVVRLDRNQLSGAVPSNMNRLSALTELYLSNNNFNGSIPDLSDMNQLIYVDMSNNTFNASTIPSWFSTLQSMTTLMMENTGLQGPIPVSLFNLSNLQSVVLRNNKLSGSVDIGTAYSSQLQLIDLRGNSITELKQKTTNITITLFGNPMCLETGVSSQSYCQDTKPTYSYSTPSNCGTVPCNSNQISSPNCKCAYPYTGTLFFRALGFSNHDNSSYYVALQQSLMKTFQSQNNLPVDSVALTNPFKNDLDYFGVTLQVFPSQVDRFNRTAVSTVAFVLSNQIFKPPEVFSPYYYIGSNYENFLGELSGSTKSSNKGVIAGVVVGGTILLLLVIVLGVYAFRQKRNNQQSMELNPFVHWNSDDNNGNAPQLKAARWFSFEELKRYTNNFSDENDIGAGGYGKVYSATLPTGEAVAIKRARKESIQGAHEFKTEIELLSRVHHKNLVSLKGFCFEKGEQILVYEYIPNGTLMEAILGKSQVKLDWVRRLRAALGAARGLAYLHELANPPIIHRDVKSGNILLDEHLNAKVADFGLSKPLTDTERTHVTTQVKGTMGYMDPEYYMTNQLTDKSDVYSFGVVLLELVTGRKPIEHGTYIVREVSNAMDRSKNLYNLHDVIDPYIRTSDLKGLERFVDLAMSCVNESAAKRPSMAEVLKEIEDIIQLMGLTPSSIVESTSTSERNYKVASIDDIINDSHQDFSYSGVFPSRKVEPH*	958

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00983	957	SUPERFAMILY	L domain-like	47	396	-	-
	Pte19g00983	957	CDD	STKc_IRAK	640	905	-	-
	Pte19g00983	957	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	754	766	IPR008271	GO:0004672\|GO:0006468
	Pte19g00983	957	PANTHER	RECEPTOR-LIKE PROTEIN 55	39	904	-	-
	Pte19g00983	957	ProSitePatterns	Protein kinases ATP-binding region signature.	640	666	IPR017441	GO:0005524
	Pte19g00983	957	FunFam	LRR receptor-like serine/threonine-protein kinase HSL2	710	918	-	-
	Pte19g00983	957	ProSiteProfiles	Leucine-rich repeat profile.	269	291	IPR001611	GO:0005515
	Pte19g00983	957	SMART	serkin_6	634	906	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte19g00983	957	Gene3D	Phosphorylase Kinase; domain 1	604	709	-	-
	Pte19g00983	957	ProSiteProfiles	Protein kinase domain profile.	634	906	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte19g00983	957	Gene3D	Transferase(Phosphotransferase) domain 1	710	915	-	-
	Pte19g00983	957	SUPERFAMILY	Protein kinase-like (PK-like)	620	926	IPR011009	-
	Pte19g00983	957	Gene3D	Ribonuclease Inhibitor	188	285	IPR032675	-
	Pte19g00983	957	Pfam	Protein kinase domain	635	900	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte19g00983	957	FunFam	Leucine-rich repeat family protein	31	186	-	-
	Pte19g00983	957	FunFam	Leucine-rich repeat protein kinase family protein	602	709	-	-
	Pte19g00983	957	Gene3D	Ribonuclease Inhibitor	286	422	IPR032675	-
	Pte19g00983	957	FunFam	Leucine-rich repeat protein kinase family protein	187	286	-	-
	Pte19g00983	957	Gene3D	Ribonuclease Inhibitor	27	187	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00983	Pte-Chr19	8720024	8726760	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00983	12	958	Receptor kinase-like Gene Family	AT5G49760	53.459	0.0	953

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-VIII-1	Pte19g00983		Pkinase	5.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00983	-		-	cit:102607213	1112.06