Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00976 ATGGGGGGTTTGATTGATCTCAACACTACGGAGGATGATGAAACCCCTTCATCTGGTTCCACTGTTTCTTCATCCTCTGCTTCTGGTTTAAGTTTCACTGCTACTGCTTCAGCATCTGCAACGACTGAGAGCTCTTCTTCTGTTTGCTTGGAGCTATGGCACGCTTGTGCTGGACCATTGATCTCTCTGCCTAAGAAAGGCAGTGTTGTGGTGTACTTTCCGCAGGGTCACTTTGAGCAGATTCATGATTTCCCTTCTTCTCCTCCATACAATTTCCCTTCCCAAGTCTTCTGTCGAGTTGTTGATGTCAAGCTCCACGCTGAAGAGGGAAGTGATGAGGTTTATTGTCAGGTTTCTCTGGTACCTGAAATGGAGGCAATTGAGAAAAAATTACGAGTAGAAACTAATGATGATGAAGAAGGGGATACTGATGCAGTTGCTAAGTCATCTACACCTCATATGTTCTGCAAGACGCTTACTGCATCTGACACAAGCACTCATGGAGGATTTTCAGTCCCCCGTCGAGCAGCTGAAGATTGCTTCCCTCCCCTTGATTACAATCAACAGAGACCTTCACAAGAGCTTGTAGCAAAGGATCTGCATGGCATGGAATGGAGGTTCCGGCATATATACAGGGGACAACCACGGAGGCATTTGCTCACGACTGGATGGAGCGCATTTGTAAACAAGAAGAAGCTTATTTCTGGAGATGCTGTGCTTTTCTTAAGGGGTGAGGATGGAGAGCTGAGGTTGGGAATCCGAAGGGCATCTCAATTGAAAGGTGGAGGTGGTCCATCAGGTCCTTTTGGTTTGCAATTGAAGTCTAGTTCTCTTCTCGATGTGATCACTGCTGTATCTAATAGATGCTCCTTTAACATTTGCTACAATCCTAGAGCCAGCTCATCAGAGTTCATTATATCTCTTAATAAGTACCTGCGAAGCATTGATCAATCTTTCCTGGTTGGAACAAGGTTCAGAATGCGTGTTGAAGGTGATGATGCTGCAGAGAGAAGATGTACTGGTATAATAGCTGGAATTAGTGATCTGGATCCTGCTAGGTGGCCTAGATCAAAGTGGAAGTGCCTTTTGGTTAGGTGGGATGATCTTGAGGCCACGAGGCATAATAGGGTTTCTCCTTGGGAAATTGAGCCTTCTGGCTGTGGTTCCCATCCTAATAGTTTCATGGTTACTGGTTTGAAGAGGACGAGGCTGCAATTGCCTTCGGATAATCAAGAAATTCCAGTTCACAATGGAATTGGAGTATCAGACTTTGGGGAATCTTTAGGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTCAATCATCATCCCTGTGATGGTGTGGTGTCTCAGAGTTGGAATTTGTCTGAGATGAGGAGGTGCTACCGTGGGTCAAACCTTTGTGGAGCCGGTGCAATTGGAGATAGTATTAGAGCTCCAAAGATGGATTCTGACATTTCCTGTAATGCAAAAGGCTTGAGTGAATCTTTTGGATTACAGAAAAAGGTCTTGCAAGGTCAAGAAATATTTCCAGGTCCCATATATGGAAGAGCTTTACCTGTCATGGAAGGTGGTGCAAATTTTCAGCATGAAATTTATGATGGGTGCCAAGTTCTGAGCTCTAGAAATAGATGGTCAACTCATATACCTGGCAGTTCTTCGCATCTGCAATTGCACGCAGCTGCACAGCCTCCACCACTGTCATCTCCATCATCTGTTTTAAAGTTCCGCCAAGCTATTAATCCAAGTTCCAACAGTTACCCCACGTGTATCATGACCGGTAACCACATCCATAGTTCCCTTGCATCTGATGTAAATGGTGGCAAGCTGCCATTATCTTCACTCAATCAACCTATATCAGGAGATGAGTTTCAGGCAGGCTCAAATTCCTTAGGTTTGTTGAAAGAGAGAAATGAGTTTGGGATTTTGCGACCTCAGGTGTCTCAAACAGCCTACAGTAGCAGAAAAGAGACAGTTTCCTCGTGCAAAAATAGTTGCAGACTGTTTGGTTTCTCATTAACTCAAGAAAATCACACAGAGAATCAAGACAATGTTGGTGCAATCTCTGGTCCTTTAAATTCTGGGTTTTCTTACCTTATGCTGGAGAGCAATTCAATCAAGACTCTCCCATGA 2139 0.4437 MGGLIDLNTTEDDETPSSGSTVSSSSASGLSFTATASASATTESSSSVCLELWHACAGPLISLPKKGSVVVYFPQGHFEQIHDFPSSPPYNFPSQVFCRVVDVKLHAEEGSDEVYCQVSLVPEMEAIEKKLRVETNDDEEGDTDAVAKSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYNQQRPSQELVAKDLHGMEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLISGDAVLFLRGEDGELRLGIRRASQLKGGGGPSGPFGLQLKSSSLLDVITAVSNRCSFNICYNPRASSSEFIISLNKYLRSIDQSFLVGTRFRMRVEGDDAAERRCTGIIAGISDLDPARWPRSKWKCLLVRWDDLEATRHNRVSPWEIEPSGCGSHPNSFMVTGLKRTRLQLPSDNQEIPVHNGIGVSDFGESLGFQKVLQGQEILGVNHHPCDGVVSQSWNLSEMRRCYRGSNLCGAGAIGDSIRAPKMDSDISCNAKGLSESFGLQKKVLQGQEIFPGPIYGRALPVMEGGANFQHEIYDGCQVLSSRNRWSTHIPGSSSHLQLHAAAQPPPLSSPSSVLKFRQAINPSSNSYPTCIMTGNHIHSSLASDVNGGKLPLSSLNQPISGDEFQAGSNSLGLLKERNEFGILRPQVSQTAYSSRKETVSSCKNSCRLFGFSLTQENHTENQDNVGAISGPLNSGFSYLMLESNSIKTLP* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00976 712 Gene3D - 153 256 IPR015300 -
Pte19g00976 712 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677
Pte19g00976 712 SMART B3_2 155 257 IPR003340 GO:0003677
Pte19g00976 712 MobiDBLite consensus disorder prediction 1 29 - -
Pte19g00976 712 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677
Pte19g00976 712 MobiDBLite consensus disorder prediction 10 29 - -
Pte19g00976 712 FunFam Auxin response factor 153 257 - -
Pte19g00976 712 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 46 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte19g00976 712 SUPERFAMILY DNA-binding pseudobarrel domain 148 259 IPR015300 -
Pte19g00976 712 CDD B3_DNA 153 255 IPR003340 GO:0003677
Pte19g00976 712 Pfam Auxin response factor 282 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte19g00976 712 FunFam Auxin response factor 318 387 - -
Pte19g00976 712 Gene3D - 318 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00976 Pte-Chr19 8573010 8578532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00976 44 441 B3 DNA Binding Superfamily AT5G60450 56.311 5.26e-141 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte19g00976 B3 2.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00976 K14486 - qsa:O6P43_031885 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00976 19 8573010 8578532 Pte19g00976 19 8573010 8578532 RCT