Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00974 ATGAGATGGTGCAATGACTCCCATCAGCAGCATGAGGAGGAGGAGGAGGAGAACGGGGAGAGGGCTGCTGATAATATTCATCAACAGCCAAATATAGTGCCTACTTGTACTCTTGATGACAAGAAAACCACTGAAATGCAAATTGTAGCTTGCCCATCTTGTGACCACAGTATACAGATCCAAGATAAGGCGGGGATTCTTGATTTGCCAGGATTACCAGCTGGGGTGAAGTTTGATCCAAGTGACCAAGAGATACTTGAGCATTTAGAGGCCAAGGTGCTTTGTGATGCTCCTAAGCTTCATCCTCTAATTGATGAGTTCATCCCTACACTTGAAGGAGAGAATGGAATCTGTTATACTCATCCAGAAAAGCTACCAGGAGTAAGCAAAGATGGGCAAATCCGTCACTTCTTCCATCGACCTTCCAAAGCATACACAACTGGAACAAGGAAAAGAAGAAAGGTGCATACTGATGAAGATGGAAGTGAAACAAGATGGCATAAGACAGGAAAGACAAGACCAGTTTATGTTGGTGGTGAACTGAAGGGTTTCAAGAAAATCCTAGTCCTGTACACCAATTATGGCAGGCAACGTAAACCTGAGAAGACAAACTGGGTAATGCATCAGTACCACCTCGGAAGAAATGAAGAAGAGAAAGATGGTGAACTAGTGGTTTCAAAAGTTTTCTATCAAACTCAGCCTAGACAATGTGGCACAGCGATTAAGGACTCATTTGAGAAAAGATTGAATAATGGAATTAATGGTGGAGATGGTTTTCCTATACCTAAAAATGCAGCAGGTCTTATTGAGTACTATAATCCTTCTTTCATTAATTATGTTGATCATGGGGTTCATGATAGAGAAAGCCCACCTCAGTTCATTCCTAATTTGGTTCTTCAAGGTGATGGGTCTTCATATATTCGTTTGTCCATGGATGCAAGCAAAGCAAGACTTGAAGGTAAATAA 966 0.4161 MRWCNDSHQQHEEEEEENGERAADNIHQQPNIVPTCTLDDKKTTEMQIVACPSCDHSIQIQDKAGILDLPGLPAGVKFDPSDQEILEHLEAKVLCDAPKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVYVGGELKGFKKILVLYTNYGRQRKPEKTNWVMHQYHLGRNEEEKDGELVVSKVFYQTQPRQCGTAIKDSFEKRLNNGINGGDGFPIPKNAAGLIEYYNPSFINYVDHGVHDRESPPQFIPNLVLQGDGSSYIRLSMDASKARLEGK* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00974 321 MobiDBLite consensus disorder prediction 145 167 - -
Pte19g00974 321 Pfam No apical meristem (NAM) protein 73 212 IPR003441 GO:0003677|GO:0006355
Pte19g00974 321 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 38 247 IPR044799 GO:0003700
Pte19g00974 321 FunFam NAC domain-containing protein 73 81 235 - -
Pte19g00974 321 MobiDBLite consensus disorder prediction 1 22 - -
Pte19g00974 321 Gene3D NAC domain 81 235 IPR036093 GO:0003677|GO:0006355
Pte19g00974 321 SUPERFAMILY NAC domain 66 231 IPR036093 GO:0003677|GO:0006355
Pte19g00974 321 ProSiteProfiles NAC domain profile. 72 231 IPR003441 GO:0003677|GO:0006355
Pte19g00974 321 MobiDBLite consensus disorder prediction 151 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00974 Pte-Chr19 8555718 8558378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00974 1 317 NAC Transcription Factor Family AT1G28470 57.975 3.83e-118 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte19g00974 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00974 - - jre:108979818 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00974 19 8555718 8558378 Pte19g00974 19 8555718 8558378 RCT
Pte19g00974 19 8555718 8558378 Pte2g00849 2 7633689 7636453 RCT