Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00956 ATGGCCCCAAGAGATAAGACGGCGGCCAACGTTGGAAAATCCAACGGCAACGTGAAGGAGGTGCATTTTAGAGGAGTGAGGAAGAGACCATGGGGAAGGTATGCGGCTGAGATCAGAGATCCCGGTAAGAAAAGCCGTGTTTGGCTAGGTACTTTTGATACGGCCGAAGAAGCTGCGCGGGCATACGATGCCGCAGCTAGAGAGTTCCGTGGTGCCAAGGCCAAGATCAACTTTCCTATTCCTTCTGAAAACAACGTTTTGAACGATAGCCTCGTTAAGAACGACAACCAGAGCAGTCCGAGCCAGAGCAGTGCGGTGGAGTCCTCCAGTGTTGAGCCTGCTCTGATGGTTGATTCTTCACCGGTGGATCTCAACCTGGCTGGAGCCACTACCGCAGAGAGATTTCCTTTTCAGCAATTCCAGGCAATGAATGGGGCTTTCGTCGGTAACTTCTCAACGGCCAATCGTATTTTCTACTACGACGCGCTGTTGCGTGCTGGTATGATCGGAAACCAAGGCCCGAGCCAACAACTGAGATTGGATCCGTTTTATAGCCATCCACATTTTCAACATCCTCCTATGGTAGCACCGGACAACGGTTTCCCGGGCGCTGGCAGTGGTGCCAAGAGCGATTCTGACTTATCCTCTGTGATCGATCTCAACCACGATGATCCGAACTCACGTTTGGCTTTCGATCTTGACCTCAATCTACCTCCACCACCTGAGACGGCGTAA 735 0.5197 MAPRDKTAANVGKSNGNVKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAAREFRGAKAKINFPIPSENNVLNDSLVKNDNQSSPSQSSAVESSSVEPALMVDSSPVDLNLAGATTAERFPFQQFQAMNGAFVGNFSTANRIFYYDALLRAGMIGNQGPSQQLRLDPFYSHPHFQHPPMVAPDNGFPGAGSGAKSDSDLSSVIDLNHDDPNSRLAFDLDLNLPPPPETA* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00956 244 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Pte19g00956 244 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Pte19g00956 244 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g00956 244 MobiDBLite consensus disorder prediction 92 112 - -
Pte19g00956 244 MobiDBLite consensus disorder prediction 192 221 - -
Pte19g00956 244 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pte19g00956 244 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 153 - -
Pte19g00956 244 FunFam Ethylene-responsive transcription factor 2 21 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00956 Pte-Chr19 8388630 8390077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00956 1 182 AP2-EREBP Transcription Factor Family AT5G44210 43.750 1.24e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte19g00956 AP2 3.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00956 K09286 - qsa:O6P43_012677 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00956 19 8388630 8390077 Pte19g00956 19 8388630 8390077 RCT