LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00950	ATGGAGGACGAGAGGAAGAATGTAATGATCATGACTGATCATATCCATAGCACAAAGGGCGGCTCCAGAGCTGGGGGTTCAACACCTCCTACTTGTCAAGTTGATTACTGTAATGCTGATCTGATTGATGCTAAGCACTACCACAGGCGTCATAAGGTGTGTGAATCTCATGCTAAAGCTCCTTCTGTCTCCATTGCAGGTCTGCAACAACGTTTTTGCCAGCAATGTAGCAGATTCCATGATCTGCTGGAGTTTGATGACAACAAAAGAAGCTGCAGAAGGCGTTTGGCAGGACACAACGAGCGCCGAAGGAAAAATTCGTCATCTGATTATCGAAGCGAAGGATTAAAGGATCAAGCTAAACGTTGA	369	0.4553	MEDERKNVMIMTDHIHSTKGGSRAGGSTPPTCQVDYCNADLIDAKHYHRRHKVCESHAKAPSVSIAGLQQRFCQQCSRFHDLLEFDDNKRSCRRRLAGHNERRRKNSSSDYRSEGLKDQAKR*	123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00950	122	Pfam	SBP domain	32	105	IPR004333	GO:0003677
	Pte19g00950	122	ProSiteProfiles	Zinc finger SBP-type profile.	29	106	IPR004333	GO:0003677
	Pte19g00950	122	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	21	107	IPR044817	GO:0003677
	Pte19g00950	122	SUPERFAMILY	SBT domain	30	109	IPR036893	GO:0003677\|GO:0005634
	Pte19g00950	122	MobiDBLite	consensus disorder prediction	93	122	-	-
	Pte19g00950	122	FunFam	Squamosa promoter-binding-like protein 14	23	93	-	-
	Pte19g00950	122	Gene3D	-	22	93	IPR036893	GO:0003677\|GO:0005634
	Pte19g00950	122	MobiDBLite	consensus disorder prediction	102	122	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00950	Pte-Chr19	8344790	8346609	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00950	10	115	SBP-box Gene Family	AT1G53160	63.208	4.10e-42	135

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Pte19g00950		SBP	1.8e-32	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00950	-		-	qsa:O6P43_031859	176.022

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pte19g00950	19	8344790	8346609	Pte19g00950	19	8344790	8346609	RCT