Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00942 ATGGCCACAGCACCATTTCCCTTATCTCTGTCACTTCACTCTACAACTCCTCGCTTATTACTCCTACCCGCCACCAAATTTAATGTTTCATATTCACTCAAAACCCAACAAGCTCAACCAAATTTGCTATCAACCTTCTCATTCCCCTCCTTCTCCTTTGCGGCCATCAAGGCCAACCCTTCTGACGACATTGACACATCTTTCTTCGACAATGCCGACCCAAATGAGGAAATCCCATTTGAACCACCAGAAGCCCCTCAAGGCTACGTCGCCCAGCCTTATTTTGACGAAGGTCCAATGGAAACTGAAGAAGAAATTGCCGCTGCTTATGAGGAGAGGTACGGTCCGGCTTACAGTGGGGTCAGTTATTTGGGCAACAACGTAGATGTGATGGATTCAAAGCTCAAAGCTCGCACAAGAGATAGGGATGAGAAGATAAGAGATGGCTTCGAAGAGAGGGTTGTTCAGGTGAGGAGGGTTACGAAGGTGGTGAAGGGAGGTAAGAATTTGAATTTCAGAGCAGTTGTTGTTGTAGGTGATAAGAAGGGTCGAGTGGGTGTTGGTGTTGGCAAGGCCAAGGAGGTTGTTTCTGCTGTTCAGAAGTCTGCCATTGATGCTAGGAGAAATATTATCACTGTCCCAATGACCAAGTATATGACTTTTCCTCACAGAGCGGATGGAAAATTTGGAGCAGCTAAAGTGATGCTTAGACCTGCATGTCCCGGTACCGGTGTCATTGCTGGTGGATCTGTGAGGATTGTTCTTGAATTGGCCGGCGTGGAGAATGCTCTGGGCAAGCAGCTTGGGAGTAACAATGCCTTGAATAATGCTAGAGCTGTAATTGTCGCAGTTCAGAAGATGAGGCTATTCGAAGAAGTTGCTGCGGACCGTGGGATCCCGGTGGAACAACTATATAGATGA 921 0.4723 MATAPFPLSLSLHSTTPRLLLLPATKFNVSYSLKTQQAQPNLLSTFSFPSFSFAAIKANPSDDIDTSFFDNADPNEEIPFEPPEAPQGYVAQPYFDEGPMETEEEIAAAYEERYGPAYSGVSYLGNNVDVMDSKLKARTRDRDEKIRDGFEERVVQVRRVTKVVKGGKNLNFRAVVVVGDKKGRVGVGVGKAKEVVSAVQKSAIDARRNIITVPMTKYMTFPHRADGKFGAAKVMLRPACPGTGVIAGGSVRIVLELAGVENALGKQLGSNNALNNARAVIVAVQKMRLFEEVAADRGIPVEQLYR* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00942 306 Gene3D - 217 305 IPR014721 -
Pte19g00942 306 FunFam 30S ribosomal protein S5 139 211 - -
Pte19g00942 306 SUPERFAMILY dsRNA-binding domain-like 146 215 - -
Pte19g00942 306 Pfam Ribosomal protein S5, C-terminal domain 227 297 IPR005324 GO:0003735|GO:0005840|GO:0006412
Pte19g00942 306 Hamap 30S ribosomal protein S5 [rpsE]. 131 303 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pte19g00942 306 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 137 301 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte19g00942 306 ProSitePatterns Ribosomal protein S5 signature. 167 199 IPR018192 -
Pte19g00942 306 ProSiteProfiles S5 double stranded RNA-binding domain profile. 150 213 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte19g00942 306 NCBIfam 30S ribosomal protein S5 149 302 IPR005712 GO:0003735|GO:0006412|GO:0015935
Pte19g00942 306 SUPERFAMILY Ribosomal protein S5 domain 2-like 220 298 IPR020568 -
Pte19g00942 306 Gene3D - 141 211 - -
Pte19g00942 306 Pfam Ribosomal protein S5, N-terminal domain 150 214 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Pte19g00942 306 FunFam 30S ribosomal protein S5 215 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00942 Pte-Chr19 8297993 8300234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00942 143 290 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 31.410 1.72e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00942 K02988 - qsa:O6P43_012664 360.533