Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00916 ATGGGGATTGAGGGTTTGATGTTAGAGATGGGTCTGAGTTCTACGCAGGTGTCAAGTAAACGCCCTTCAATGAAGAGACAACCACATCATCAGCAACAAGCTTCTGAACCTTTGAAGTGTCCAAGATGTGATTCCACAAATACCAAGTTCTGTTACTTCAACAACTACAATGAGTCTCAGCCTCGCCATTACTGCAGAGCATCCCTAGAATCTCTTCACTTATAA 225 0.4311 MGIEGLMLEMGLSSTQVSSKRPSMKRQPHHQQQASEPLKCPRCDSTNTKFCYFNNYNESQPRHYCRASLESLHL* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00916 74 MobiDBLite consensus disorder prediction 11 39 - -
Pte19g00916 74 ProSiteProfiles Zinc finger Dof-type profile. 38 74 IPR003851 GO:0003677|GO:0006355
Pte19g00916 74 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 24 67 IPR045174 GO:0003700|GO:0006355
Pte19g00916 74 MobiDBLite consensus disorder prediction 1 39 - -
Pte19g00916 74 Pfam Dof domain, zinc finger 37 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00916 Pte-Chr19 7757903 7760326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00916 21 67 C2C2-Dof Transcription Factor Family AT3G50410 61.702 3.49e-15 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte19g00916 zf-Dof 3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00916 - - jre:108982969 90.8929