Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00893 ATGAGCAGCTTTGCCTTCTTTCACAGATTCTCTAAAGCTCACCATGATTATCCTTCGCTCTCCAGGTTCCTCGTATTGTTCACTGTCAGTGGTGGCGGACTTTTGGCATATGCTGAAGCCAATCCAAGTCAGAGCATACAAGGAGTTGTTCCATCTGAAGCAGAGGCCAAGAAAAAGAAAGTGGTCGTTCTTGGTACAGGCTGGGCAGGAACCAGTTTTTTAAGGAATCTCAAGAATCCTACTTATGATATTCAGGTGGTTTCACCTCGTAACTATTTTGCGTTCACTCCTCTGCTTCCTAGTGTTACTGTCGGTACTGTGGAGCCTCGCAGCATAGTAGAACCAATTCGCAACATCGTGAGGAAGAAAAAGGTAGACATTCAATTCAATGAAGCAGAGTGTATTAGGATTGATGCAGAGAATAAGAAGATCTATTGCAGATCTAATACGAATAACAACTTGAACGGGAAGGAAGAATTTGTGCTTGACTACGATTACCTTATAATATCTGTGGGAGCTACTGTTAACACATTCAATACCCCTGGAGTGGTTGAAAATTGCCATTTCTTGAAGGAAGTGGAAGATGCTCAGAGGATCCGCAGAACTGTTATTGACTGTTTTGAGAGGGCAAGTCTACCGAATATAAGTGATGAAGAGAGGAAGAAGATTCTTCATTTTGCAGTGGTAGGTGGTGGGCCAACTGGTGTGGAGTTTGCTGCTGAGCTTCATGATTTTGTGAATGAGGATTTGGTCAAGTTATATCCTGGAATCAAAGAGTTGGTTAAAATCACACTTCTGGAAGCAACTGATCATATCTTGAGTATGTTTGACAAAAGAATTACTGCTTTTGCTGAAGCAAAGTTTGGGAGAGAAGGCATAGACGTCAAAACAGGATACATGGTGACAAAGGTGACTGACAAGGAGATTTCCACAAAGCAAATGAAAAATGGGGAAGTTTCTTCCATGCCCTATGGAATGGTAGTCTGGTCAACTGGAATTGCCACACGTCCCTTCGTCAAAGATTTTATGAAGCAAGTTGGCCAGGCAAATAGACGTGCCTTAGCTACTGACGAGTGGCTGAGAGTTGAGGGCTGTGACGGTGTATATGCTCTTGGTGATTGTGCCACAATAAACCAGCGCAAAGTCATGGAAGATATTGCCGCCATATTTAGCAAGGCTGACAAGGACAAATCCGGAACATTGACTGTGAAGGAGCTTCAGGAAGTGATTGATGATATATGTGAAAGATATCCACAGGTTGAGCTCTATTTGAAGAGTAAACAGATGAAAAACATTTTTGACTTGCTGAAGGAAGCAAAGGCAGATGCTGACAAGGAAACCGTTGAACTTAACATAGAAGAACTTAAGAAAGCGCTTTCTCAAGTGGACTCTCAGGCGAAATTTCTTCCTGCTACTGCACAGGTTGCAGCCCAGCAGGGCGCCTATCTTGCCAAATGTTTCAACCGTATGGAAGAGTGTGAGAAGAATCCTGAGGGTCCTCTCAGATTCAGAGGTGAAGGGCGTCACAGATTCCGTCCATTCAGGTACAAGCATTTAGGACAATTTGCTCCTCTTGGTGGAGAGCAGACTGCAGCTCAACTTCCTGGAGATTGGGTTTCAATCGGTCACAGTAGCCAATGGTTATGGTACTCTGTCTACGCTAGGTACATCTTTCGCTCTTCATTTTTCAGTGCTTTCGAAGTGTAG 1707 0.4359 MSSFAFFHRFSKAHHDYPSLSRFLVLFTVSGGGLLAYAEANPSQSIQGVVPSEAEAKKKKVVVLGTGWAGTSFLRNLKNPTYDIQVVSPRNYFAFTPLLPSVTVGTVEPRSIVEPIRNIVRKKKVDIQFNEAECIRIDAENKKIYCRSNTNNNLNGKEEFVLDYDYLIISVGATVNTFNTPGVVENCHFLKEVEDAQRIRRTVIDCFERASLPNISDEERKKILHFAVVGGGPTGVEFAAELHDFVNEDLVKLYPGIKELVKITLLEATDHILSMFDKRITAFAEAKFGREGIDVKTGYMVTKVTDKEISTKQMKNGEVSSMPYGMVVWSTGIATRPFVKDFMKQVGQANRRALATDEWLRVEGCDGVYALGDCATINQRKVMEDIAAIFSKADKDKSGTLTVKELQEVIDDICERYPQVELYLKSKQMKNIFDLLKEAKADADKETVELNIEELKKALSQVDSQAKFLPATAQVAAQQGAYLAKCFNRMEECEKNPEGPLRFRGEGRHRFRPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGHSSQWLWYSVYARYIFRSSFFSAFEV* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00893 568 SUPERFAMILY EF-hand 339 469 IPR011992 -
Pte19g00893 568 ProSitePatterns EF-hand calcium-binding domain. 394 406 IPR018247 -
Pte19g00893 568 Gene3D - 428 561 - -
Pte19g00893 568 Gene3D - 50 427 - -
Pte19g00893 568 Pfam Pyridine nucleotide-disulphide oxidoreductase 59 383 IPR023753 GO:0016491
Pte19g00893 568 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 50 410 - -
Pte19g00893 568 SMART efh_1 385 413 IPR002048 GO:0005509
Pte19g00893 568 SUPERFAMILY FAD/NAD(P)-binding domain 58 277 IPR036188 -
Pte19g00893 568 PANTHER NADH DEHYDROGENASE 52 556 IPR045024 GO:0003954|GO:0006116
Pte19g00893 568 Coils Coil 436 465 - -
Pte19g00893 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 225 243 - -
Pte19g00893 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 164 182 - -
Pte19g00893 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 61 80 - -
Pte19g00893 568 PRINTS FAD-dependent pyridine nucleotide reductase signature 353 375 - -
Pte19g00893 568 ProSiteProfiles EF-hand calcium-binding domain profile. 381 416 IPR002048 GO:0005509
Pte19g00893 568 SUPERFAMILY FAD/NAD(P)-binding domain 219 378 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00893 Pte-Chr19 7543238 7547531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00893 1 554 Chloroplast and Mitochondria Gene Families AT4G21490 74.414 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00893 K03885 - qsa:O6P43_012561 959.903