LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00877	ATGGAGATGAAGAAGTGTGAACTATGCAACTCTCCAGCTAGAGTGCATTGTGACTCAGATCAAGCCAGCCTCTGCTGGGACTGCGATGCCAACGTTCACAGCGCAAATTTTCTGGTTGCTAATCATTCAAGGGTTCTTCTCTGCCATGTCTGTCAATCTCCGACTGCATGGATAGGTTCAGGACCGAAACACGTCCCCACAATCTCAGCTTGTGAAAATTGTGCTGGTGAGAATAGCATAGATAATGATGAAGAAAATGATGATGAAGTAGAAGCTGAAAGTGGAAATTATATCCGTAACGACCAAGAAAACAAGGTAGTGCCATTGTCATTGGATCCAACCCCACCAGTTTCTAGTTCATCAAATGCTGACGAAGCAGAAGCTGAAAGTGGAAATCATATCCATAACGACGAAGAAAACCAGGTAATGCCATTGACATTGGATCCAACCCAACCAGTCTCTAGTTCATCAAATAATTCAGCATGTTCCAAGACTTCCTCTAATGGTGAAGATGTCTGA	519	0.4335	MEMKKCELCNSPARVHCDSDQASLCWDCDANVHSANFLVANHSRVLLCHVCQSPTAWIGSGPKHVPTISACENCAGENSIDNDEENDDEVEAESGNYIRNDQENKVVPLSLDPTPPVSSSSNADEAEAESGNHIHNDEENQVMPLTLDPTQPVSSSSNNSACSKTSSNGEDV*	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00877	172	Pfam	B-box zinc finger	2	46	IPR000315	GO:0008270
	Pte19g00877	172	SMART	bboxneu5	1	47	IPR000315	GO:0008270
	Pte19g00877	172	CDD	Bbox1_BBX-like	5	47	-	-
	Pte19g00877	172	ProSiteProfiles	Zinc finger B-box type profile.	1	47	IPR000315	GO:0008270
	Pte19g00877	172	MobiDBLite	consensus disorder prediction	137	172	-	-
	Pte19g00877	172	MobiDBLite	consensus disorder prediction	113	127	-	-
	Pte19g00877	172	MobiDBLite	consensus disorder prediction	76	172	-	-
	Pte19g00877	172	PANTHER	ZINC FINGER PROTEIN CONSTANS-LIKE 10	5	165	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00877	Pte-Chr19	7396663	7397181	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00877	4	74	C2C2-CO-like Transcription Factor Family	AT4G27310	63.380	2.27e-29	106

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Pte19g00877		zf-B_box	4.6e-07	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00877	-		-	mdm:103434670	153.68