Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte19g00874 | ATGGCGACTCAGTTACCGGACGATTTCAAGTGTCCGATTTCTCTCGAAATAATGTCTGACCCGGTTATCCTCCCAACGGGCCATACCTTTGATAGGGCTTCCATTCAGCGGTGGCTGGACGCTGGTCACCGGACATGTCCAATTACCAAACTGCCCCTCCCTGATCACCCGTCCCTCATTCCCAACCACGCCCTTAGAAGCATGATTTCCAATTATGCCCTCATATCTTCGCAGCGGCCTATACCTCAGCCTGAGCCGGAGGCCCACATCACCACACTCACCTCTCGCTTGTGCAATATCGACTCAAAAATCGAATCTTTGGACCAGCTCACTCGGTTGTCTAAGCGTGACTCGGTGTTCCGCAGGAGGTTGACTGAGGCAGGCGCTGTGTCGGCAGTGCTTCGCTGTGTTGACTCGAACAACATGTTGCTTCAAGAGAAAGCTCTATTCTTGCTGTTGAACCTTAGTCTGGACGATGATAACAAAGTGGGTTTGGTTGCAGAAGGAGCAGTACGTAGAGTTGTGGCTGTTCTTCTTAGTGGGTTACCGGATTCCCGAGCTGTAGCGGCGACTTTATTGACGAGTTTGGCTGTTGTGGAGGTTAATAAAGCCACAATTGGGGCATACCCACATGCCATTTCTGCGTTGGTTTCACTTCTGAGGGATGGAAAAGGGAGAGAGCAGAAAGAAGCTGCAACAGCCCTCTTCACCATTTGTTCGTTCCCTGATAATCGACGAAGAGCTGTGGAATGTGGAGCAGTGCCAATTCTGCTTAGAATTGCCGATTCCGGGCTTGAAAGGGCAGTTGAAGTTCTAGGTACTTTGGCAAAGTGTCAGGAAGGTAGGGAAGAGATGGAGAAGTACTGTGGAACGCTACAGATTTTGGTGAGAGTACTAAGGAATGGCAGCTCAAGAGGAGTGCAATATGCGTTATTAACATTGAACTCTCTCTGTTGTAATAGCAAAGAAATGTGTATAGAGACTGTGGAAGAAGGGGTTCTGGAAATCTGTTTGGGATTACTGGAAGACGATAATGAAAAAGTCAGGAGGAATGCTTCCAGTTTGATTAAAGTTCTACGTGGAAATTGTCGTATAAGATGA | 1101 | 0.4814 | MATQLPDDFKCPISLEIMSDPVILPTGHTFDRASIQRWLDAGHRTCPITKLPLPDHPSLIPNHALRSMISNYALISSQRPIPQPEPEAHITTLTSRLCNIDSKIESLDQLTRLSKRDSVFRRRLTEAGAVSAVLRCVDSNNMLLQEKALFLLLNLSLDDDNKVGLVAEGAVRRVVAVLLSGLPDSRAVAATLLTSLAVVEVNKATIGAYPHAISALVSLLRDGKGREQKEAATALFTICSFPDNRRRAVECGAVPILLRIADSGLERAVEVLGTLAKCQEGREEMEKYCGTLQILVRVLRNGSSRGVQYALLTLNSLCCNSKEMCIETVEEGVLEICLGLLEDDNEKVRRNASSLIKVLRGNCRIR* | 367 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte19g00874 | 366 | SUPERFAMILY | ARM repeat | 99 | 359 | IPR016024 | - | |
| Pte19g00874 | 366 | CDD | RING-Ubox_PUB | 6 | 55 | IPR045210 | - | |
| Pte19g00874 | 366 | Gene3D | - | 74 | 208 | IPR011989 | - | |
| Pte19g00874 | 366 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 73 | IPR013083 | - | |
| Pte19g00874 | 366 | Gene3D | - | 209 | 364 | IPR011989 | - | |
| Pte19g00874 | 366 | SMART | arm_5 | 158 | 198 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | SMART | arm_5 | 278 | 319 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | SMART | arm_5 | 241 | 277 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | SMART | arm_5 | 321 | 361 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | SMART | arm_5 | 117 | 157 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | SMART | arm_5 | 202 | 240 | IPR000225 | GO:0005515 | |
| Pte19g00874 | 366 | ProSiteProfiles | U-box domain profile. | 4 | 79 | IPR003613 | GO:0004842|GO:0016567 | |
| Pte19g00874 | 366 | SUPERFAMILY | RING/U-box | 3 | 73 | - | - | |
| Pte19g00874 | 366 | PANTHER | U BOX DOMAIN-CONTAINING | 5 | 358 | - | - | |
| Pte19g00874 | 366 | SMART | Ubox_2 | 8 | 72 | IPR003613 | GO:0004842|GO:0016567 | |
| Pte19g00874 | 366 | FunFam | RING-type E3 ubiquitin transferase | 4 | 76 | - | - | |
| Pte19g00874 | 366 | Pfam | U-box domain | 6 | 73 | IPR003613 | GO:0004842|GO:0016567 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte19g00874 | Pte-Chr19 | 7327906 | 7331969 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte19g00874 | 1 | 361 | U-box Gene Family | AT4G21350 | 63.957 | 1.94e-159 | 450 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte19g00874 | - | - | qsa:O6P43_031748 | 551.206 |