Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00872 ATGGCTGAGGAATTCCAAGCTGGTGTTTGCGGTGGTAATTGGTGGAACTCCTCAAGGAGCGTTCTATCAACAGGCTTATCTCCATGTTCCTTGGCAATTAACAATGATATAGGGTGCTTCAACCCTTGGCAAACTGATATGGTATTAGATCAGTCGAAGGTTGCACGATCTTGTGCTGAGGAATCTAACTTAGTATCTGACAACAGCTCTATGGTTTTCCAAGACGTTCATGCACCAAATCCTAGTACAACTACAAGTTGTAGCGGTAGAAGTTTGAGTTATCCCAACTTACAAATGATGGGTTATGCCCTCTCGTCCTCATCAAATTGGAATTCACCTTTGCTTGTTGGAAGAAGTACCGAAAGCAATAACCATTCCATGGTGGAAGAAGACATGGACACAAAGTTGGAATATAGACAAGAAGATAGCACGAATGATGATTCTCAAATCCAAAAGGATTGGGACATGAAGACCTTCTCATCTTGTGCAAACCAAGTTTCTCCAATCAAGTATTTCAAGCCAACTGCTTATCAAGAATTTGCTTTGGACCAACAAAGTGTGAGTACAGTCACAAGTGCAACCCCATCAATAGCTGGCCAAGACTTGTCATCTGGGTTCCCATTAGCTTCAACAAATTCATATGCCTCCTATACACAGAGTTTGATTCATGCCGATCCTGATCAGCCCCAGCACTCACTTTTCACCGATCAGTCTAGCAATTATTCATCTACTGCAACTTATGCCACCAATGACTCGTTGACAGATTGGTCTATGTTTCCTTCCTTCTTGAATCCCTCAGATCCTAAGCAGCAACACGGTGGTCTGCATTTTGCCAACAATACTCCTTTTTGGAATGCTTCTAGTGCAGCCCTTAATGATATTCGATCTAATATTTTCAATTCGTCACAATTACAATATGTTTTGCCAAATGAAGAGAAACCAAATTGTCCAACTTCCATCACCAAGTCGAAGACTCAAGAGGGACTCCAAGAAACTGGATCAGCGCTGAAGAAAAGCACTGGTTGTGAACCGGCTTTCAAAAGGCCAAGGATTGAAACTCCATCACCATTACCAACTTTTAAGGTCCGGAAAGAGAAGCTTGGGGACAGAATCACTGCCCTTCAGCAACTAGTATCACCTTTCGGAAAGACAGACACTGCATCCGTTCTCCATGAAGCTATCGAATACATCAAGTTCCTCCATGCTCAAGTCAATAATTTGAGTGCTCCTTATGTGAAAAATGGAATTCCCTCTCAGCACCAACAGGGTATTGAAATTTTGAAAGAAAAAGACGATTCAAAAGATCTAAGAAGTCGAGGGCTATGCTTGGTGCCAATTTCAAGCACATTCCTCTTTGCTAATGAGACCACTGCTGATTTTTGGACTCCATCATTTGGAAACACGTACAGGTAG 1413 0.4218 MAEEFQAGVCGGNWWNSSRSVLSTGLSPCSLAINNDIGCFNPWQTDMVLDQSKVARSCAEESNLVSDNSSMVFQDVHAPNPSTTTSCSGRSLSYPNLQMMGYALSSSSNWNSPLLVGRSTESNNHSMVEEDMDTKLEYRQEDSTNDDSQIQKDWDMKTFSSCANQVSPIKYFKPTAYQEFALDQQSVSTVTSATPSIAGQDLSSGFPLASTNSYASYTQSLIHADPDQPQHSLFTDQSSNYSSTATYATNDSLTDWSMFPSFLNPSDPKQQHGGLHFANNTPFWNASSAALNDIRSNIFNSSQLQYVLPNEEKPNCPTSITKSKTQEGLQETGSALKKSTGCEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHAQVNNLSAPYVKNGIPSQHQQGIEILKEKDDSKDLRSRGLCLVPISSTFLFANETTADFWTPSFGNTYR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00872 470 MobiDBLite consensus disorder prediction 310 337 - -
Pte19g00872 470 FunFam Transcription factor bHLH123 family 361 423 - -
Pte19g00872 470 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Pte19g00872 470 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 172 450 - -
Pte19g00872 470 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 414 IPR036638 GO:0046983
Pte19g00872 470 CDD bHLH_AtbHLH_like 357 408 IPR045239 -
Pte19g00872 470 Gene3D - 361 415 IPR036638 GO:0046983
Pte19g00872 470 MobiDBLite consensus disorder prediction 310 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00872 Pte-Chr19 7310193 7313664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00872 240 471 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 48.148 3.66e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00872 - - vvi:100264251 447.203