Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00858 ATGGAAATTTCATCTTCTAGAGGGTTCCCTGAAGTGGGATTTTTGGATCCTAGCTTCATCGGTCAGTGGCACTTGGCCTCTCTTGATGAGCTTACTATGCTGCCAATAGCTTCTGCTGTTGGAGATAGCCTGCACCAATCATTGCCTCACCAAAACTTGAATCACAAATCTGCACCGGAACATTCAGAGACATTCAGTAACAGACCAACAAAACAGCAGAAGACAAACAGCTGGGGTTCAGAAAAAAGTGATCAGATATCATATTCACAGTTCTCTTCTCCCGAAAATGTTCTTTCCTTCGTTGATTCAAACTACAATAATCATGGGGGTAGGGTGAAACCTAAAAAGGAGATTGTGTACCCCTACAACAATGGCTTAACTCCTTCTGATATTCTATTGCCTAAAGGGACTGTGGGAAATGAAAGCTACCTATTCAGCACCTGTCAAAGTACAAAACGGTATAGCTCTCAAGCACAAGATCACATCATAGCTGAGAGAAAGCGCAGAGAAAAGCTTAGTCAGCGTTTCATAGCTCTATCTGCACTTGTACCTGGCCTCAAGAAGATGGACAAGGCTTCGGTTCTTGGAGATGCTATTAAGTTTATTAAGCAATTACAAGAAAAGGTGAAGACCCTTGAGGAGGAGCAGACCAAAAAGGAATGCATTGAGTCAGTGATCATTGTGAAGAAAAGTCTGCTTTCAGCTGATTCAGATTGTGTCCCAGGTGTTGGGGATCCTTTTGAAGAGAACCTTCCAGAAATTGAAGCCAGATTCTGTGACAAGAGTGTCCTTATTAGAGTTCACTGTGAGAGGAAGAAAGGTGTCACAGAGAAAATGGCCATTGAAATTGAGAAGCTGCATCTGACAGTCATCAATAGCATTGCCTTAGCCTTCGGGACTTCTGCTCTTGATGTAACAATTATTGCTCAGACGGATAATGAATTTTGCATGACACTGAAGGATTTTGTGAAGAATCTACGTGCAGCTTTCAAATCATTCATGTGA 1005 0.4209 MEISSSRGFPEVGFLDPSFIGQWHLASLDELTMLPIASAVGDSLHQSLPHQNLNHKSAPEHSETFSNRPTKQQKTNSWGSEKSDQISYSQFSSPENVLSFVDSNYNNHGGRVKPKKEIVYPYNNGLTPSDILLPKGTVGNESYLFSTCQSTKRYSSQAQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKFIKQLQEKVKTLEEEQTKKECIESVIIVKKSLLSADSDCVPGVGDPFEENLPEIEARFCDKSVLIRVHCERKKGVTEKMAIEIEKLHLTVINSIALAFGTSALDVTIIAQTDNEFCMTLKDFVKNLRAAFKSFM* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00858 334 Coils Coil 195 222 - -
Pte19g00858 334 CDD bHLH_AtNAI1_like 156 231 - -
Pte19g00858 334 PANTHER BHLH TRANSCRIPTION FACTOR 45 330 - -
Pte19g00858 334 FunFam Basic helix-loop-helix family protein 153 222 - -
Pte19g00858 334 Gene3D - 155 225 IPR036638 GO:0046983
Pte19g00858 334 SMART finulus 162 211 IPR011598 GO:0046983
Pte19g00858 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Pte19g00858 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 217 IPR036638 GO:0046983
Pte19g00858 334 MobiDBLite consensus disorder prediction 47 85 - -
Pte19g00858 334 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00858 Pte-Chr19 7089214 7091364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00858 148 335 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.923 1.22e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte19g00858 HLH 3.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00858 - - qsa:O6P43_031702 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00858 19 7089214 7091364 Pte19g00858 19 7089214 7091364 RCT