Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00854 ATGGATGACGATGATTATTACGATGATGAGAGCTACGAAGATCAATTCTCCGATGATAATCATAACGATCTTGATGAAGGTGACTTTCAGGTGGAGGAGGAAGATTCCGCCGTGGACCCTAGAGGCTCGTCCTCCCAGGTGATCACTAGCGAATCGTTATTGGCCGCACAGCAAGAAGATTTGGGGAAAGTAATGGATATGTTGTCTTTGAAAAAACACCATGCACGAACATTGCTCATAAACTACCGTTGGGATGTTGAGAAGCTGCTTACAGTGGTGGTGGAGAAGGGGAGGGAAGCAGTCTGTGAAAAAGCAGGTGTTCCTGTGGTTGAGTGTGACGCAGCTTTGTCCTCCGAAGCCTCATCTTCTAGTACATGCAATATATGCATGGAGGACGTACCTGTCTCAAAGTTGATAGTTAATGATTGTGGTCATTACTTTTGTAATAGCTGTTGGACGGAGCATTTCGTTGTAAAGATCAATGAGGGCAAGAGTAGGCGCATAACATGTATGGAATACAAGTGCAAGGCTATTTGTGATGATGAGGTTGTAAGAAGATTAGTCAGGAAAAGGGGTTCTGGTTTAGCTGAAAAATTTGATCGTTTCCTTTTGGAATCATATATTGAAGACAATAGAATGGTTAAATGGTGTCCAAGTGCTCCTCATTGTGGAAATGCGATTCGTGTAAAGGAGGATCCACTATGTGAAGTTGAATGCATCTGCGGCTTCCAGTTCTGTTTTAATTGCAGCGATGGAGCACATTCACCTTGCTCATGTCTTCTGTGGGAGCTTTGGAACAAAAAATGTGCAGATGAATCTGAGACTGTTAACTGGCTTACAGCCAACACCAAGCCTTGTCCCAAGTGTCATAAGCTGGTGGAAAAGAATGGAGGATGCAATCTTGTAATCTGTGTCTGCGATCAAGCATTCTGTTGGCTCTGTGGCGGTGCTACCGGTAAGACACACAATTGGACTAGCATTGAGAATCACAGTTGTGGACGATACAAAGAGGAAGTAGAGGGAAAAGCTGAGCTTGCAAACAGATACCTAGTTCGCTATATCCATTACTATAATCGATACAAAGCTCATTTGGATTCATTTAATCTGGAATGCAAGCATCGGGAAACGCTGAAAGAAAAAATAGTGGCTTTGGAAAACAGTGAATCCGCATTTAAAGATTTTTCTTGGCTAACCAATGGACTCCATCGGCTCTTCATGTCTAGACGTATCCTTCTATGTTCATATGCATTTGCATACTACATGTTCAGTGATGAAGTGTTTAAAGAAGAGATGACAGAGAAAGAAAGAGAATTGAAACAAAACTTGTTTGAGGATCAACAGCAGCAGCTTGAGGCAAATGTGGAGAAGCTTTCTCTGTTCTTACAAGAGTCAATGAATCAGTACGTCGATGAAAAACTCGACAATCTAAGACTGAAGTCAATTGATTCTTCTGCAATTACAGATAATCTCTGCCGAAAATTGTATGAAGTCGTAGAGAATGATTTGCTGGGTTCTCTTAAGCATTCAACACAATATATTGCTCCATACTTGTCAAATGGAATAGAGAAAGCCGTAGAACTTTCTGCATGA 1590 0.4164 MDDDDYYDDESYEDQFSDDNHNDLDEGDFQVEEEDSAVDPRGSSSQVITSESLLAAQQEDLGKVMDMLSLKKHHARTLLINYRWDVEKLLTVVVEKGREAVCEKAGVPVVECDAALSSEASSSSTCNICMEDVPVSKLIVNDCGHYFCNSCWTEHFVVKINEGKSRRITCMEYKCKAICDDEVVRRLVRKRGSGLAEKFDRFLLESYIEDNRMVKWCPSAPHCGNAIRVKEDPLCEVECICGFQFCFNCSDGAHSPCSCLLWELWNKKCADESETVNWLTANTKPCPKCHKLVEKNGGCNLVICVCDQAFCWLCGGATGKTHNWTSIENHSCGRYKEEVEGKAELANRYLVRYIHYYNRYKAHLDSFNLECKHRETLKEKIVALENSESAFKDFSWLTNGLHRLFMSRRILLCSYAFAYYMFSDEVFKEEMTEKERELKQNLFEDQQQQLEANVEKLSLFLQESMNQYVDEKLDNLRLKSIDSSAITDNLCRKLYEVVENDLLGSLKHSTQYIAPYLSNGIEKAVELSA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00854 529 ProSiteProfiles TRIAD supradomain profile. 122 336 IPR044066 -
Pte19g00854 529 SUPERFAMILY RING/U-box 122 209 - -
Pte19g00854 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 212 IPR013083 -
Pte19g00854 529 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 417 IPR031127 GO:0004842|GO:0016567
Pte19g00854 529 CDD Rcat_RBR_ARI1-like 280 333 - -
Pte19g00854 529 Pfam Ariadne domain 336 528 IPR045840 -
Pte19g00854 529 Pfam IBR domain, a half RING-finger domain 197 259 IPR002867 GO:0008270
Pte19g00854 529 ProSiteProfiles Zinc finger RING-type profile. 126 170 IPR001841 -
Pte19g00854 529 SUPERFAMILY RING/U-box 197 266 - -
Pte19g00854 529 MobiDBLite consensus disorder prediction 1 46 - -
Pte19g00854 529 FunFam RBR-type E3 ubiquitin transferase 120 211 - -
Pte19g00854 529 Gene3D - 255 503 - -
Pte19g00854 529 CDD BRcat_RBR_ANKIB1 204 268 - -
Pte19g00854 529 SUPERFAMILY RING/U-box 267 326 - -
Pte19g00854 529 MobiDBLite consensus disorder prediction 1 33 - -
Pte19g00854 529 FunFam RBR-type E3 ubiquitin transferase 255 503 - -
Pte19g00854 529 CDD RING-HC_RBR_TRIAD1 125 177 - -
Pte19g00854 529 SMART ibrneu5 197 259 IPR002867 GO:0008270
Pte19g00854 529 SMART ibrneu5 267 332 IPR002867 GO:0008270
Pte19g00854 529 Coils Coil 428 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00854 Pte-Chr19 7063259 7067572 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00854 65 527 ARIADNE family AT2G16090 63.011 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00854 K11968 - aew:130779854 707.597