Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00839 ATGGGGAGGGGGAAGATTGTGATTAGAAGGATTGACAATTCCACAAGCAGACAGGTCACTTTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCAAAAGAGCTGGCTATCCTTTGTGACGCAGAAGTTGGATTAATGGTTTTCTCCAGCACAGGCAAGCTCTACGATTATACCAATACCAGCATGAGAGCAGTTATCGAACGCTACAAGAAGCTTAAGGAGGAACAACGTGAACACATGAAACCTGGCTCCGAGCTCAATTTATGGCAAAGGGAGGTAGCGACAATAAGACAACAACTGCAGCAGTTACAAGAAGGCCACAGGCAATTGACGGGTGAAGATCTCTCAGGCATGAATATTAAAGATCTACAAAATTTAGAAAATCAACTTGAAAACAGTTTGAAAAGTGTCCGTATGAAGAAGGATCAAATTCTAACTGAAGAAATAAAAGAATTGAGACAACAGGAAAATCTGATTCAGCAGGAAAACACTGAACTCCAAAGAAAGCTAGACTTTTATCGTGGAGAAAACACAGAACTATGGAACAAGGCTAATGGATCAAAGGATATCAATGAAGAAAACACAACACGCCATATTTCTACTACTGTTGGGTGTGATTTACAAGTTCGAACTGCTCTCCAGCTGAGCCAGCCACAGACTCAACACACTGAACCACAAAGCAGAGCAATGAAACTGGGACTAAGTCTGCTTTGA 714 0.4132 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELAILCDAEVGLMVFSSTGKLYDYTNTSMRAVIERYKKLKEEQREHMKPGSELNLWQREVATIRQQLQQLQEGHRQLTGEDLSGMNIKDLQNLENQLENSLKSVRMKKDQILTEEIKELRQQENLIQQENTELQRKLDFYRGENTELWNKANGSKDINEENTTRHISTTVGCDLQVRTALQLSQPQTQHTEPQSRAMKLGLSLL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00839 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00839 237 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pte19g00839 237 Coils Coil 120 169 - -
Pte19g00839 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 192 - -
Pte19g00839 237 Pfam K-box region 87 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00839 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Pte19g00839 237 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte19g00839 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte19g00839 237 Coils Coil 86 113 - -
Pte19g00839 237 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pte19g00839 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00839 Pte-Chr19 6969717 6978859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00839 1 229 MADS-box Gene Family AT2G22630 54.148 2.40e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte19g00839 K-box 3.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00839 K09264 - qsa:O6P43_031685 296.975