Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00838 ATGGGGAGAGGGAAGATTGTGATTAGAAGGATCGAAGATTCCACAAGCAGACAGGTGACTTTCTCAAAGAGAAGAAGTGGACTGCTGAAGAAGGCAAGAGAGCTGTCTATTCTCTGTGATGCAGAAGTTGGATTAATCGTGTTCTCCAGCACCGGCAAGCTCTACGATTATGCCAGCTCCAGCATAAGAGCAGTAATCGATCGTTACAACAAGCTTAAGGAGGTACATCAGCAACCCTTGAATCCTGACTCTGAGGTCAAGTTATGGCAAAGGGAGGCAGCAACACTGAGACAGCAACTGCAGCAAATGCAAGAATGCCACAGGCAGCTGATGGGTGAAGAACTCTCAGGCTTGAATGTTAAAGATCTACGAAATTTAGAAAATCAACTGGAGCTAAGTTTGAAGGGTGTCCGTATTAAGAAGGATCAAATTCTAACTGAAGAAATAAAAGAATTGAAACAAAAGGAGGATCTCATTTATCAAGAAAATGCTGAACTCTTCAGACAGATAGACCTTATTAGTAGAGAAAACACAGAACTAAGAAACAAGGTTCATAGATCAAGGAACTTGAACGAAGAAAGCACAAGGCGAAGTATCTCGTACACCAATGGTGAGCATGATTTATATGTGCCAACTTCTCTCCAATTAAGCCAGCCACAGGCTCAACACAGTGAACCACGCATAGCAATGAAACTGGGACTCAATTTGCTTTGA 714 0.4244 MGRGKIVIRRIEDSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIVFSSTGKLYDYASSSIRAVIDRYNKLKEVHQQPLNPDSEVKLWQREAATLRQQLQQMQECHRQLMGEELSGLNVKDLRNLENQLELSLKGVRIKKDQILTEEIKELKQKEDLIYQENAELFRQIDLISRENTELRNKVHRSRNLNEESTRRSISYTNGEHDLYVPTSLQLSQPQAQHSEPRIAMKLGLNLL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00838 237 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pte19g00838 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Pte19g00838 237 Coils Coil 163 183 - -
Pte19g00838 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00838 237 Gene3D - 13 108 IPR036879 GO:0003677|GO:0046983
Pte19g00838 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte19g00838 237 Coils Coil 86 113 - -
Pte19g00838 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 195 - -
Pte19g00838 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte19g00838 237 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00838 Pte-Chr19 6959464 6963431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00838 1 236 MADS-box Gene Family AT2G14210 59.494 7.30e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte19g00838 K-box 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00838 K09264 - tcc:18608170 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00838 19 6959464 6963431 Pte19g00838 19 6959464 6963431 RCT