Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00798 ATGTCTCACTTCGGCAAGTCTGGTCCTCCTGACATCGCAGACACCTACTCTCTTCTCGTACTCAACATTACCTTCCGTACAACTGCTGATGATCTGTTTCCTTTGTTCGATAAGTACGGCAAGGTCGTCGATGTCTTCATCCCCAAAGACCGAAGGAGTGGTGAGTCGAGAGGGTTTGCTTTTGTGCGGTATAAGTATGCAGATGAGGCACAGAAAGCTGTGGATAGATTGGACGGGAGACGTGTTGATGGTCGAGACATATCAGTGCAATTTGCAAAATATGGACCAAATGCTGAGAGAATTCATAAAGGAAGAATTGTTGAATCACTCCCCAAATCCAGATACAGGTCTAGAAGTCGCAGTCCAAGGAGAAGGTACAAGGATGATTATTACAGAGACAGGGACTACAGGAGGAGAAGCCGCAGCAGGAGTTGGGATAGGTATGATCGTGACAGGCATTGTCGCAGAGACAAGGATTACCGTCATCGAAGCAGGAGCTACAGTGCTGATCCTGATGATTACAGGAGCCAAAAAAGAGTGTATGATGATGATCGACGTAGTCGAAGTTGGAGTCGATCAGGGGACAGCCCCTCTCCTGCTCGAGGTAGCCCTAGATCAGGAAGGAGTCCTCCACCAAAGAGGAGTGTCTCTCCCCGGAGGAGTACCAGAGTTGCGAGTCCGGAGAGCTGTGGCCGTGATGGAAGATCCCCAACACCTCAAAGTGTTTCCCCACATAGTCAACATGATCAATCACGCAGCCCGTCTCAAGGAAAAATAGATGCTGATGAATGA 792 0.4886 MSHFGKSGPPDIADTYSLLVLNITFRTTADDLFPLFDKYGKVVDVFIPKDRRSGESRGFAFVRYKYADEAQKAVDRLDGRRVDGRDISVQFAKYGPNAERIHKGRIVESLPKSRYRSRSRSPRRRYKDDYYRDRDYRRRSRSRSWDRYDRDRHCRRDKDYRHRSRSYSADPDDYRSQKRVYDDDRRSRSWSRSGDSPSPARGSPRSGRSPPPKRSVSPRRSTRVASPESCGRDGRSPTPQSVSPHSQHDQSRSPSQGKIDADE* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00798 263 Gene3D - 4 105 IPR012677 -
Pte19g00798 263 SMART rrm1_1 17 90 IPR000504 GO:0003723
Pte19g00798 263 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 237 - -
Pte19g00798 263 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Pte19g00798 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Pte19g00798 263 MobiDBLite consensus disorder prediction 160 191 - -
Pte19g00798 263 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Pte19g00798 263 CDD RRM_SRSF2_SRSF8 18 90 - -
Pte19g00798 263 MobiDBLite consensus disorder prediction 233 254 - -
Pte19g00798 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 87 IPR000504 GO:0003723
Pte19g00798 263 MobiDBLite consensus disorder prediction 160 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00798 Pte-Chr19 6454523 6459688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00798 14 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.443 4.84e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00798 K12891 - qsa:O6P43_031609 252.677