LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00756	ATGTCAGACGATCTAGAATATCGCTGTTTTATTGGAAATCTTTCATGGTCAACATCTGACAGAGAGCTAAAAGATGCATTTGAGAAGTTTGGAAAGCTTCTTGAGGCTAAGGTCGTTGTTGACAAATTTTCTGGCCGATCTCGGGGATTTGGTTTTGTCACATTTGATGAAAAGCAAGCTATGGAAGAAGCTATTGAAGCAATGAATGGGATGGATTTGGATGGGCGGTCCATCACTGTCGACAAAGCTCAGCCTCAACAAGCATCAAGTAGAGATGATGGTGGTGACCGCAATCGTGACCGTGATCGCAATCGTGATCGTAATCGTGATTATGGTGGTGGGCGAGGATCTGGAGGAGGTGGGGAGTGCTTCAAGTGTGGCAAGCCTGGTCATTTTGCTAGAGAGTGTCCAAGTGAAGGGGGTAGAGGGGGCAGGTATGGTGGTAGGGATGATAGATATGGTGGTGGAAGTTCTGGTGCTCGTTATGGTCCAGACAGGAATGGGGATCGTTCAGGTGGCCGCAACAGGGATGGTGGAGGTGGTGGTCGTGGAGGTTTTGGATCTGATCGATACAGTCGCGATCGCTCTGGACCTTATGACCGTCGGGGATCAGGAGGTTTTCGTTCTTGA	630	0.4889	MSDDLEYRCFIGNLSWSTSDRELKDAFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDEKQAMEEAIEAMNGMDLDGRSITVDKAQPQQASSRDDGGDRNRDRDRNRDRNRDYGGGRGSGGGGECFKCGKPGHFARECPSEGGRGGRYGGRDDRYGGGSSGARYGPDRNGDRSGGRNRDGGGGGRGGFGSDRYSRDRSGPYDRRGSGGFRS*	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00756	209	Pfam	Zinc knuckle	122	138	IPR001878	GO:0003676\|GO:0008270
	Pte19g00756	209	Gene3D	-	2	94	IPR012677	-
	Pte19g00756	209	SMART	c2hcfinal6	122	138	IPR001878	GO:0003676\|GO:0008270
	Pte19g00756	209	CDD	RRM2_NsCP33_like	8	83	-	-
	Pte19g00756	209	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Pte19g00756	209	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Pte19g00756	209	ProSiteProfiles	Zinc finger CCHC-type profile.	123	138	IPR001878	GO:0003676\|GO:0008270
	Pte19g00756	209	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	78	IPR000504	GO:0003723
	Pte19g00756	209	Gene3D	-	117	176	-	-
	Pte19g00756	209	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	205	-	-
	Pte19g00756	209	MobiDBLite	consensus disorder prediction	92	112	-	-
	Pte19g00756	209	MobiDBLite	consensus disorder prediction	81	209	-	-
	Pte19g00756	209	SUPERFAMILY	Retrovirus zinc finger-like domains	106	142	IPR036875	GO:0003676\|GO:0008270
	Pte19g00756	209	FunFam	Glycine-rich RNA-binding protein RZ1A	1	117	-	-
	Pte19g00756	209	SUPERFAMILY	RNA-binding domain, RBD	7	115	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00756	Pte-Chr19	6056051	6056947	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00756	9	84	Eukaryotic Initiation Factors Gene Family	AT4G34110	39.474	2.92e-09	54.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00756	-		-	mof:131163859	211.46