Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00735 ATGACTGACAATCATCCCATTGTGGTTGACAATGGAACTGGGTTTATCAAGGCTGGATTTGCAGGTGATGATGCCCCAAAGGCTGTGTTTCCCTGTGTCGTGGGTAGACCTCGTAAACGTGGTGTAACACAGAAGGAAGCTTATTTGGGGGATGAGTTCCTCTCAGCAAGAGCTATCCTTAAATTGACATATCCAATTGAGCATGGTATAGTCAGCAATTGGGATGATATGGTGGAGATTTGGGATCATACTTTCTTCCACGTGCTTGAGACTGAACCTGAAGAACACCCAGTTCTTCTGACCGATGCACCACTCAACCCCAAGGTGAACAGAGAGAAGATGGCTGAAATCATGTTCGAGAATTTCAATGTGCCTGCCATGTATGTTGCTACTCAAGCAGTTCTGTCCCTCTTAGCCAGTGGACGTACAACAGGTATTGTGGTTGATTGCGGTGATGGTGCGAGCCATGCTGTTCCTGTTCGTGATGGCTATGCTCTACAGAATGCGATTCTGAAGGTTGAAATTGGGGGGCGTGATTTGACAGACTACTTGATGAATATCTTGACAGAGAGAGGGTACTACTTCTCCACCAATTCCGAGCGTGAAGTTGTGCGTGATATCAAAGAGAAACTCGGTTTTGTTGCGCTTGATTATGAGCAAGAGTTGGAGAATGTAAAGAGCAGCTGTGCTGTTTTAAAGAACTACGAGTTGCCTGATGGGCAGGTCGTCGGAATTGAATCTCAGAGGTTCAGATGCCCAGAAATTCTCTTCAATCCGTCTTTGATTGGCAGGAATCATGGTGGTATCCAGGATATGATCTACAACTCAATCATGAAATGTGAGTTCAGGACCCGGAAGGACCTGTATGGAAATATAGTGCTTAATGGTGGATCAACCATGTTCCCTGGTATGGCGGATAGAATCAGCAAGGAAATTACAGCACTTGTTCCCAGTAGCATGAGAGTGATGGTCGAGGCTCCTCCAGATAGGCAATTCAGAGCTTGGATGGGTGGTTCCATCTTTGCTTCACTTGATCACTTTCAACATATGTGGATTTCCAACGAGGAATATAAAGAATCAGGTTCTGCAATTGTTCACCGGAAATGTCCTTGA 1113 0.4537 MTDNHPIVVDNGTGFIKAGFAGDDAPKAVFPCVVGRPRKRGVTQKEAYLGDEFLSARAILKLTYPIEHGIVSNWDDMVEIWDHTFFHVLETEPEEHPVLLTDAPLNPKVNREKMAEIMFENFNVPAMYVATQAVLSLLASGRTTGIVVDCGDGASHAVPVRDGYALQNAILKVEIGGRDLTDYLMNILTERGYYFSTNSEREVVRDIKEKLGFVALDYEQELENVKSSCAVLKNYELPDGQVVGIESQRFRCPEILFNPSLIGRNHGGIQDMIYNSIMKCEFRTRKDLYGNIVLNGGSTMFPGMADRISKEITALVPSSMRVMVEAPPDRQFRAWMGGSIFASLDHFQHMWISNEEYKESGSAIVHRKCP* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00735 370 Pfam Actin 3 369 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 110 123 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 231 247 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 25 34 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 44 55 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 135 154 IPR004000 -
Pte19g00735 370 PRINTS Actin signature 56 78 IPR004000 -
Pte19g00735 370 FunFam Actin, alpha skeletal muscle 175 266 - -
Pte19g00735 370 SUPERFAMILY Actin-like ATPase domain 141 369 IPR043129 -
Pte19g00735 370 SUPERFAMILY Actin-like ATPase domain 3 148 IPR043129 -
Pte19g00735 370 PANTHER ACTIN 6 362 IPR004000 -
Pte19g00735 370 Gene3D - 133 333 - -
Pte19g00735 370 Gene3D Actin; Chain A, domain 4 175 266 - -
Pte19g00735 370 SMART actin_3 4 370 IPR004000 -
Pte19g00735 370 CDD NBD_sugar-kinase_HSP70_actin 7 176 - -
Pte19g00735 370 FunFam Muscle actin 7 147 - -
Pte19g00735 370 FunFam actin, alpha sarcomeric/skeletal-like 267 333 - -
Pte19g00735 370 Gene3D - 7 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00735 Pte-Chr19 5883271 5886565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00735 3 369 Cytoskeleton Gene Families AT5G09810 70.350 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00735 K10355 - oeu:111401141 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00735 19 5883271 5886565 Pte19g00735 19 5883271 5886565 RCT