Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00716 ATGGTGATGAACAAGTCTAGCTCAGGTCGTAGAAAAATTCCAATTGTGAAGATAGAGAAGAAAAGTCATTTACAGGTCACATTTTCTAAACGTAGAACTGGGCTTTTCAAGAAAGCTAGTGAGCTTTCTACACTTTGTGGGGTAGAAATTGCAATCATAGTTTTCTCTCCAGTTGGTAAGGCATTTTCTTTTGGCAATCCAGAAGTTGAGTCTATTCTTGAGCGTTACATCAATGGGAATTCCCCATTAAACTCATGCAGTCACCAAATTCTTGAGGCTCATAGAAATGCTAATGTTCAGGATTTGAACATGAAATTGAATCAAATTCTGAATCAATTAGAGTTTGAGAAGAAGAAAGGTGAAGAGCTTGACCAGGTAAGCAAGACAAGAAGGCAGTTTTGGTGGGAGAACCCCATTGATGAACTTGAAAGCTATGAACTCCAACAATTGAAGGCTGCAATGCAAGAGTTAAAGAGGAACATAGCAAACCAAGTTGACAAGATCGTTGTGGAGCAGACGAGCAATGCTGCCTCAGCATTTATGGGGACAAGTAATTGTGAGGGTAACGAAGCATTTGGAAGCAAAACTGACATGATCAATGCTCCCACTGTTTCCAATGTTTATAACATGTATGGATATCTTTGA 645 0.3922 MVMNKSSSGRRKIPIVKIEKKSHLQVTFSKRRTGLFKKASELSTLCGVEIAIIVFSPVGKAFSFGNPEVESILERYINGNSPLNSCSHQILEAHRNANVQDLNMKLNQILNQLEFEKKKGEELDQVSKTRRQFWWENPIDELESYELQQLKAAMQELKRNIANQVDKIVVEQTSNAASAFMGTSNCEGNEAFGSKTDMINAPTVSNVYNMYGYL* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00716 214 PANTHER MADS BOX PROTEIN 10 163 - -
Pte19g00716 214 Coils Coil 99 119 - -
Pte19g00716 214 CDD MADS_MEF2_like 9 81 IPR033896 GO:0000977|GO:0045944
Pte19g00716 214 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Pte19g00716 214 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Pte19g00716 214 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Pte19g00716 214 SUPERFAMILY SRF-like 9 79 IPR036879 GO:0003677|GO:0046983
Pte19g00716 214 Coils Coil 147 167 - -
Pte19g00716 214 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
Pte19g00716 214 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Pte19g00716 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Pte19g00716 214 FunFam Agamous-like MADS-box protein AGL62 20 85 - -
Pte19g00716 214 Gene3D - 89 181 - -
Pte19g00716 214 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00716 Pte-Chr19 5730864 5731508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00716 3 193 Type I MADS-box Gene Family AT5G60440 46.939 1.32e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte19g00716 SRF-TF 1.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00716 - - qsu:112040126 248.054