Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00708 ATGAATTTTTATGAACATCATCTTAAACAGAAGAAGAAGCAAAAAAATCTTAAACAGAAGAATCACACTCCACTTTGGAGAAATGGACCTCCTGAGAAACCAGTGCTGTGCAATGCATGTGGATCGAGATACAGGTTGAGAGGACACCTTCAGCAATACGTACCCAAGCAACGAGGTTTTCGTTCAAGAATGCTGAAAACAGCTGCAGATCACAAAGCCATGGATGATCTGCAGCGTTACGTTAATCTTGAAGACATTGTACCAAGTAATGGTATCCTACACATGGCTAGGGTTGCTCTTCCTACCAGCAGAAAAGACTGTCATAGAAACCCTGGTGATTTCATTGACACAAGTCTGTGGAAGTCTCAAATTCCCAGTAGGAAAAGATCGGAAGTGGTATACCGTCATCAAATACATACAGAGAGATTCCGGAGACAACTCCTCAGATTGCTCAAGTATGAAGGATTGTCAAACCAGTCATCATCTTCAGATGGGGAGTTGTTATTTGATCCTAACCTGAATCCCTGCAGACCCTTCAATGAGATAGGTCTTGGGGTTGTGCTCCTCCAATGA 573 0.4258 MNFYEHHLKQKKKQKNLKQKNHTPLWRNGPPEKPVLCNACGSRYRLRGHLQQYVPKQRGFRSRMLKTAADHKAMDDLQRYVNLEDIVPSNGILHMARVALPTSRKDCHRNPGDFIDTSLWKSQIPSRKRSEVVYRHQIHTERFRRQLLRLLKYEGLSNQSSSSDGELLFDPNLNPCRPFNEIGLGVVLLQ* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00708 190 CDD ZnF_GATA 23 49 IPR000679 GO:0006355|GO:0043565
Pte19g00708 190 SMART GATA_3 13 61 IPR000679 GO:0006355|GO:0043565
Pte19g00708 190 Gene3D - 19 74 IPR013088 GO:0006355|GO:0008270
Pte19g00708 190 PANTHER OSJNBB0038F03.10 PROTEIN 22 190 IPR044589 -
Pte19g00708 190 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 21 69 - -
Pte19g00708 190 ProSiteProfiles GATA-type zinc finger domain profile. 23 63 IPR000679 GO:0006355|GO:0043565
Pte19g00708 190 MobiDBLite consensus disorder prediction 1 30 - -
Pte19g00708 190 Pfam GATA zinc finger 21 49 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00708 Pte-Chr19 5678726 5679509 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00708 21 90 C2C2-Gata Transcription Factor Family AT4G17570 48.571 7.49e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte19g00708 GATA 2e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00708 - - ccaj:109803880 115.546