LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte19g00694	ATGGGCTGTATATGCTCGAAGGGAACCTCTGCACATGAATTCCTTTACAGAACTCATGGGACAAATACAGATTTAAAGGCAAGCAAATGTTCGAAGCATCTAGGACCTTCTTTAATTGGGGAGGAAACTATAGTTGAGGGTAATGGTGTTGGAAATGATGCTACTGCAAGGTTGATATCTGATCCATCTAGGGAGGGGAAAACAAGTTCTTGTACCAATTCATCAGATGACGGGGAAAACAAAATAGACATTATTGTGAAGACATCAAAAGCACCCACTCAAAGGAATCTAAATACGCATTCTGGATCCATTAGAGAACAAGGACCACCACGGATAGCAAGTTTGACCAGAGGAGAAAGAGGAGCACAAATTGTTGCTGGATGGCCTTCTTGGCTGGTTTCAGTCGCAGGGGAAGCCATTAGTGGATGGGTACCTCGCAAAGCAGACTCATTTGAGAGGATGGACAAGATAGGACAAGGAACTTACAGCAATGTGTATAGGGCTCGTGATCTCGAAACAAGCAAAATAGTTGCATTGAAGAAGGTCCGATTTGCCAACTTGGATCCAGAAAGTGTTCGATTTATGGCAAGAGAGATTATTGTCCTACGAAGGCTTGACCATCCTAATGTTATGAAGCTTGAAGGCCTTATTACTTCAAGAGTTTCTGGAAGCTTATACCTTGTATTTGATTACATGGAGCATGATCTTGCAGGTCTTGCAGCAAAGCCTGGCATCAAGTTTACTGAAGCACAGATCAAATGTTACATGCAGCAACTACTTCTTGGTCTTGAGCACTGTCATAATCATGGCATTATTCACCGTGACATCAAGGGATCAAATCTTCTCATCGACAATAATGGCAAGTTAAAGATTGGTGACTTTGGCCTAGCAACATTTTTCCAATCCTCTCAGACACAACCATTGACAAGTCGTGTAGTAACGTTATGGTACAGACCGCCAGAGCTATTACTTGGAGCTACGAAGTATGGGGTTTCTGTAGATTTGTGGAGCAGTGGTTGCATTCTTGCGGAGTTATTTACTGGGAAACCTATAATGCCGGGACGGACAGAGGTGGAGCAACTTCATAAGATTTTCAAACTCTGTGGATCACCATCTGAAGAGTATTGGAAGAGGTCAAAATTGCCACATTCAACAATATTTAAACCTCAACATCCTTATAATCGTTGTGTTGCTGAGACATTCAAGGATCTTCCTTCATCTGCATTGAGCCTTTTGGAGGTCCTTCTGGCTGTAGAACCTGAATGTCGTGGAACAGCTTCTCTAGCTCTCCAGAATGAGTTCTTTACAACGGAACCACTTGCATGTGCCCCATCAAGTTTGCCAAAGTACCCACCAAGTAAGGAGCTTGATACCAAATTCCGAAATGAGGAGTCGAAAAGGCGAAGAACTGCTGCTGCAGCAGGGCGTGAACAGGATTCAGTTGGTAGTAGTATGAAAGAATCTAGAGCCATCCCCGCTCCTCATGCTAATGCTGAGTTGCAGTCATCAATACTGAAGAGGCAAGGTCTTGGTAACCTAAAGAGCGTTAGTGAACAATTTAATCCTGAGGAGAAAAGTCATAACATCTTCTCTATTGAAGCCCCCAGTGGAGCATCAGCAACAGCACTGAGTGGTTTCTGTCATTCTGGCCAATCAATGCATTCAAATGCATTTGGAACTTCACAAAATATGGACTGGTCTCGCGCTTTTACAGAGATTGGTCAAACTGAGAGTGTACGAAATGGTGCAGAGTTTAAGAAACAAAGATCATACCAGCATCTAGGAGCTTCACATCTATCTAGATTTTCCAATTCAGTTGCAATACGTGGTGATTCGCAATATGACATCAATGGTGACTCTAGTGTCCATTTTCATGCAAACTACAACCACGAGGACGAAACTTCTGAGAATTTGCTGGACAGAACAAATCTATCAAACAAGAAGCACGGACAGCCATATGCGAAGAACCCAGCTGTGAGTTATGCTGCTAAAAATAACCGCATGCATTTTTCTGGACCCCTGATGCCTTCTGGTGGAAATGTTGAGGACATGCTGAAGGAACATGAGAGGCAGATACAGAATGCTGTGCGCAAAGCTCGAGTTGACAAGGTCAAGCCCAAGAAAGCATCCGATGAACATGGACAAACGGAATCATTACTCCACTTTGTGCAAAATCATAGGTGA	2184	0.4322	MGCICSKGTSAHEFLYRTHGTNTDLKASKCSKHLGPSLIGEETIVEGNGVGNDATARLISDPSREGKTSSCTNSSDDGENKIDIIVKTSKAPTQRNLNTHSGSIREQGPPRIASLTRGERGAQIVAGWPSWLVSVAGEAISGWVPRKADSFERMDKIGQGTYSNVYRARDLETSKIVALKKVRFANLDPESVRFMAREIIVLRRLDHPNVMKLEGLITSRVSGSLYLVFDYMEHDLAGLAAKPGIKFTEAQIKCYMQQLLLGLEHCHNHGIIHRDIKGSNLLIDNNGKLKIGDFGLATFFQSSQTQPLTSRVVTLWYRPPELLLGATKYGVSVDLWSSGCILAELFTGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKRSKLPHSTIFKPQHPYNRCVAETFKDLPSSALSLLEVLLAVEPECRGTASLALQNEFFTTEPLACAPSSLPKYPPSKELDTKFRNEESKRRRTAAAAGREQDSVGSSMKESRAIPAPHANAELQSSILKRQGLGNLKSVSEQFNPEEKSHNIFSIEAPSGASATALSGFCHSGQSMHSNAFGTSQNMDWSRAFTEIGQTESVRNGAEFKKQRSYQHLGASHLSRFSNSVAIRGDSQYDINGDSSVHFHANYNHEDETSENLLDRTNLSNKKHGQPYAKNPAVSYAAKNNRMHFSGPLMPSGGNVEDMLKEHERQIQNAVRKARVDKVKPKKASDEHGQTESLLHFVQNHR*	728

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	53	79	-	-
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	695	715	-	-
	Pte19g00694	727	ProSiteProfiles	Protein kinase domain profile.	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte19g00694	727	FunFam	probable serine/threonine-protein kinase At1g54610	138	233	-	-
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	446	491	-	-
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	695	727	-	-
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	62	79	-	-
	Pte19g00694	727	CDD	STKc_CDK9_like	151	435	-	-
	Pte19g00694	727	SUPERFAMILY	Protein kinase-like (PK-like)	145	439	IPR011009	-
	Pte19g00694	727	Gene3D	Phosphorylase Kinase; domain 1	138	233	-	-
	Pte19g00694	727	Gene3D	Transferase(Phosphotransferase) domain 1	234	475	-	-
	Pte19g00694	727	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	271	283	IPR008271	GO:0004672\|GO:0006468
	Pte19g00694	727	PANTHER	CELL DIVISION PROTEIN KINASE	149	440	-	-
	Pte19g00694	727	Pfam	Protein kinase domain	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte19g00694	727	MobiDBLite	consensus disorder prediction	454	474	-	-
	Pte19g00694	727	ProSitePatterns	Protein kinases ATP-binding region signature.	157	180	IPR017441	GO:0005524
	Pte19g00694	727	FunFam	probable serine/threonine-protein kinase At1g54610	234	475	-	-
	Pte19g00694	727	SMART	serkin_6	151	435	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte19g00694	Pte-Chr19	5553935	5561346	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte19g00694	143	496	Core Cell Cycle Gene Families	AT5G10270	48.378	1.40e-114	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte19g00694		Pkinase	1.1e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte19g00694	-		-	qsa:O6P43_031464	942.569