Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00668 ATGGAACCAACCATGGCAATCAACTTTGTTCCTACATTTTCACAAGAAGTTGTGTACAAAGAATGCAGGCACAACCTATCTGCCTCCCTTGGCAGAGTCACCTTGGATGGCTGTCGTGAGTTTCTCAAAGCAGGTGAAGATGGTTCCAAGGAATCTTTTCAATGTGCTGCATGCGGGTGTCACCGAAGCTTCCACCGCAAAGAGATGGTCTACAACCCTATCGTCAGTAACATTGTAAACCCCCTTCCTGCATTGCCAACAAACACAGCAACCCGCGTTGAGCTGCTCGGTGCGGGGAAGAATGGCGAGGAGGAAGTTGTTAGAAGGAGGAGAAGGACTGCGTATACTCCAGAGCAGAAGAACAAGCTTGTCAATTTTGCTGAACAGTTGGGGTGGAGACCTCTGAAGCATAACTATGAACAAGTTAACAACTTCTGTTTGGAGATGGGAATCGACCGCAGGACATTCATGGTGTGGCTTGGCAACAACAGGCGCAAGGTTAACCAGAACTGCAGTAGCACTGCCAATGCTGCTTGA 537 0.486 MEPTMAINFVPTFSQEVVYKECRHNLSASLGRVTLDGCREFLKAGEDGSKESFQCAACGCHRSFHRKEMVYNPIVSNIVNPLPALPTNTATRVELLGAGKNGEEEVVRRRRRTAYTPEQKNKLVNFAEQLGWRPLKHNYEQVNNFCLEMGIDRRTFMVWLGNNRRKVNQNCSSTANAA* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00668 178 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 19 69 IPR006456 -
Pte19g00668 178 SUPERFAMILY Homeodomain-like 105 168 IPR009057 -
Pte19g00668 178 Gene3D - 97 170 - -
Pte19g00668 178 Pfam ZF-HD protein dimerisation region 17 69 IPR006456 -
Pte19g00668 178 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 68 IPR006456 -
Pte19g00668 178 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 165 - -
Pte19g00668 178 NCBIfam homeobox domain, ZF-HD class 108 164 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00668 Pte-Chr19 5356424 5356960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00668 16 168 ZF-HD Transcription Factor Family AT4G24660 35.465 1.59e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte19g00668 ZF-HD_dimer 8.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00668 - - qsa:O6P43_012185 166.392