Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte19g00666 | ATGGAGACCCATTTCACTCATAACATCTACGAGAGACGCCCCATCATGAGGTCCAAGATTCCTGCTGTAAAATGGTTTAAGGAATGGGTTCCCCAAGATCTTATAGCAACTGGTGGGAAGTGCTCGGTCTTAAAATGGGTGTCTGAGGATAAGCTCAAACAATTGAGAGACAAGGAAACAGAACCAACAGCTCCAGAACCTGAAGCAGAACCAACTACCGAGGTCCTTTTCTTATGCAGTTTTGAAGGTTGTGGAAAGACTTTTCTAGATATTATGGCATTAAGAAAACATTCTCACATTCATGGAGAGCGACAATATGCTTGCCACTTTGAGGGTTGCAACAAGAAATTTTTGGACAGTTCAAAGTTGAAAAGACATTTCCTTATTCATACAGGAGAGCGAGATTTTGTATGCCCACATGAAGGCTGTGGCAAGGCCTTCTCCCTGGATTTTAACTTGAGGTCGCACATGAAAACACACTCACTGGAGAACTACCATATCTGCCCATATCCAGATTGCGGAAAGAGATATGCTCACGAGTACAAATTGAAAAACCATATTGCTTCACATCATGTAAAGCATGGGACAGCAGAAGTGACAAAGTATACCCCGCCTGCTGTCAAACAAACTAAAAGTAATAAAGCTTCTACTGCGGGAAATTATGGTTCCGGTTCATCTGATCGCCCTTATGCTTGTCCTTATGAAGGGTGTGAAAAAGCCTACATCCATGAATACAAACTCAACCTCCATTTGAAGAGAGAGCATCCTGGCCATATGTCTGATGAAAATGCAGATAACCATGCTCAAGCTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGAAGCATATGGTGTAAAGCGTTCTAATGGCAAGAACCAGAAGCAAACTAGGCAGAAACCGAACTTGAAGTTGCCTCCTGCAAAGGTTACAAAAAGGAAGGGGTCGAATCCATCCCCTGCAAACTTGAATACATCTAAAAAGCCTTGGCCGGTGAAAGAAGAAATTTATGAGGAAGATAGTGAAGAAACAGAAGAGGACAGAGACAATGTAGAAGATGGTTGGAGATATGCAGGAAATAACGAGGATGAGGATGACGAGGAAACTGAATATGAAGACTGA | 1125 | 0.4231 | METHFTHNIYERRPIMRSKIPAVKWFKEWVPQDLIATGGKCSVLKWVSEDKLKQLRDKETEPTAPEPEAEPTTEVLFLCSFEGCGKTFLDIMALRKHSHIHGERQYACHFEGCNKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSLENYHICPYPDCGKRYAHEYKLKNHIASHHVKHGTAEVTKYTPPAVKQTKSNKASTAGNYGSGSSDRPYACPYEGCEKAYIHEYKLNLHLKREHPGHMSDENADNHAQANADNEMDEASDQEAYGVKRSNGKNQKQTRQKPNLKLPPAKVTKRKGSNPSPANLNTSKKPWPVKEEIYEEDSEETEEDRDNVEDGWRYAGNNEDEDDEETEYED* | 375 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte19g00666 | 374 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 138 | 160 | IPR013087 | - | |
| Pte19g00666 | 374 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 232 | 255 | IPR013087 | - | |
| Pte19g00666 | 374 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 106 | IPR013087 | - | |
| Pte19g00666 | 374 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 136 | 165 | IPR013087 | - | |
| Pte19g00666 | 374 | Gene3D | Classic Zinc Finger | 203 | 274 | - | - | |
| Pte19g00666 | 374 | PANTHER | TRANSCRIPTIONAL REPRESSOR PROTEIN YY | 23 | 350 | - | - | |
| Pte19g00666 | 374 | MobiDBLite | consensus disorder prediction | 360 | 374 | - | - | |
| Pte19g00666 | 374 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 106 | 135 | IPR013087 | - | |
| Pte19g00666 | 374 | FunFam | zinc finger transcription factor YY1 | 163 | 194 | - | - | |
| Pte19g00666 | 374 | Gene3D | Classic Zinc Finger | 103 | 133 | - | - | |
| Pte19g00666 | 374 | Gene3D | Classic Zinc Finger | 163 | 194 | - | - | |
| Pte19g00666 | 374 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 230 | 260 | IPR013087 | - | |
| Pte19g00666 | 374 | Gene3D | Classic Zinc Finger | 77 | 102 | - | - | |
| Pte19g00666 | 374 | Gene3D | Classic Zinc Finger | 134 | 161 | - | - | |
| Pte19g00666 | 374 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 108 | 130 | IPR013087 | - | |
| Pte19g00666 | 374 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 101 | IPR013087 | - | |
| Pte19g00666 | 374 | FunFam | Zinc finger transcription factor YY1 | 204 | 273 | - | - | |
| Pte19g00666 | 374 | FunFam | Zinc finger protein 410 | 134 | 161 | - | - | |
| Pte19g00666 | 374 | MobiDBLite | consensus disorder prediction | 287 | 302 | - | - | |
| Pte19g00666 | 374 | MobiDBLite | consensus disorder prediction | 195 | 227 | - | - | |
| Pte19g00666 | 374 | SUPERFAMILY | beta-beta-alpha zinc fingers | 225 | 253 | IPR036236 | - | |
| Pte19g00666 | 374 | MobiDBLite | consensus disorder prediction | 272 | 374 | - | - | |
| Pte19g00666 | 374 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 190 | IPR013087 | - | |
| Pte19g00666 | 374 | Pfam | Zinc finger, C2H2 type | 166 | 190 | IPR013087 | - | |
| Pte19g00666 | 374 | Pfam | Zinc finger, C2H2 type | 136 | 160 | IPR013087 | - | |
| Pte19g00666 | 374 | SMART | c2h2final6 | 77 | 101 | IPR013087 | - | |
| Pte19g00666 | 374 | SMART | c2h2final6 | 230 | 255 | IPR013087 | - | |
| Pte19g00666 | 374 | SMART | c2h2final6 | 136 | 160 | IPR013087 | - | |
| Pte19g00666 | 374 | SMART | c2h2final6 | 166 | 190 | IPR013087 | - | |
| Pte19g00666 | 374 | SMART | c2h2final6 | 106 | 130 | IPR013087 | - | |
| Pte19g00666 | 374 | FunFam | Putative zinc finger protein 143 | 103 | 133 | - | - | |
| Pte19g00666 | 374 | SUPERFAMILY | beta-beta-alpha zinc fingers | 117 | 169 | IPR036236 | - | |
| Pte19g00666 | 374 | SUPERFAMILY | beta-beta-alpha zinc fingers | 78 | 102 | IPR036236 | - | |
| Pte19g00666 | 374 | MobiDBLite | consensus disorder prediction | 203 | 224 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte19g00666 | Pte-Chr19 | 5349661 | 5353681 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte19g00666 | 8 | 359 | C2H2 Transcription Factor Family | AT4G06634 | 64.228 | 1.72e-146 | 418 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pte19g00666 | zf-C2H2 | 0.0089 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte19g00666 | - | - | zju:107412546 | 605.134 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte19g00666 | 19 | 5349661 | 5353681 | Pte19g00666 | 19 | 5349661 | 5353681 | RCT |