Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00615 ATGCAGTATGCACCCACACTCCAACACACAACTCTTCCTGTTACGCGCTACACAACACAATTTGGAACCTTGCTCGTTCCGAAGAGGCAGTCAAACTCAAGCAGTCAAGCCTATCCTACTTTGACAGCAGACATGAATGTCATGTGGAGCTTAGTAAGGATAGCAGCTCACTTGGCTGCGGGATTAGTCAGAAAGAGTCATAGGTCAACATTTTCTGGGTATGTTTCGTTGTATCTGAGTTCAGAATTCTTGATTGTGTGCATCCTTGAGGATTTGGTTTGTGATTTTATTATGGCCTTTATGACCTCAACTCAAACACCAGGCGGAACTCATACAGGGCCATCCAATGATGCCTTGTACAGGGAGTTGTGGCATGCTTGTGCTGGACCCCTTGTTAGTGTACCGCGTGAAGAGGAGCGAGTTTATTACTTCCCTCAAGGTCATATGGAGCAGCTTGAAGCATCAATGCACCAAGGGTCAGAGCAACAAATGCCTTCCTTCAATCTGCCATCCAAAATTCTTTGTAAAGTCGTCAATGTTGTTCTGCGGGCTGAAGCTGAAACGGATGAAGTCTATGCACAGATCACACTGTTGCCTGAGCCAAATTGTCAAACTGAGGTTACCGGTCCAGATCCTCCTGTTCCTGAGCCTCCAAGATGCACGGTCCATTCTTTTTGCAAAACTCTCACCGCTTCAGACACAAGCACTCATGGTGGCTTTTCTGTTCTTAGGAGACATGCAGATGACTGTTTGCCACCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTTGCGACTGATTTGCATGGGCAGGAATGGCACTTCCGACATATTTTCCGAGGGCAACCTAGACGCCACTTGCTCACAACTGGGTGGAGTGTCTTTGTCAGCTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCCTAAGAGGTGAAAATGGGGAGCTGCGTGTCGGGGTTAGGAGACACATGAGGCAACTAAATAACATGCCATCTTCTGTTATATCCAGTCACAGTATGCACCTTGGTGTTTTGGCCACTGCATCACATGCCATTGCTACTGGAACTCTCTTCTCTGTTTTCTACAAACCAAGAACAAGTCGGTCAGAGTTCATTGTAAGTGTAAATAAGTACCTTGAGGCTAGAAGTCACAAGCTTTCAGTTGGAATGAGGTTTAAGATGAGATTTGAGGGTGAAGAAGTTCCTGAAAGAAGGTTCAGTGGCACAATTGTAGGTGTTGGTGACAACAAGTCATCTGCATGGGCTGATTCTGAGTGGAGATCTTTAAAGGTGCAATGGGATGAACCTTCAACGATACTACGAGCAGATAGGGTTTCACCGTGGGAACTGGAGCCACTAGTTACCACCAATCCTCCAAACTCCCAACCTACACAAAGGAATAAACGGACAAGGCCTCCTGCTCTACCTTCATCGGTGCCAGATTCCTCAGCACAAGGCATGTGGAAATCACCAACTGATTTGGCCTCTTTCTCTTACTGTGATCCACAAAATGGACGAGATCTCTATTCATCACCTAACTTCAGTTCTACGGCTCCCAACTTTCTTGGCCTCGGTGGAAATAACTCTTCGGGTTCCATCGCAAGAAGTCCTGCATATTGGTCTAACAGAGTGGAAACCTCAAGTGGATCTTTTTCTCCAGCTGCTCAAAAGGATAATGGCGAAAAGAGACAGACCAATGGAGCAGGCTGTAGACTCTTTGGCATTCAACTTCTAGAAAATTCTAACATAGAAGAGAGTCCCACATTGGTTACAACATCTGGAAAAGTGGGGACTGATGTATCTCCACCATCTCTAGACGCCGACTCTGAACAGCATTCAGAACCATCAAATATCAGATCTGAGGTTCCTTCAGGGAGCTATGATGCAGAGAAATCGTGTCTTAGATCTACCCAAGAATCACAAAGCAGGCAAATAAGAAGCTGCACTAAGGTTCACATGCAAGGGATTGCAGTTGGAAGGGCTGTAGACTTGACTCGTTTTGATTGTTATGAGGATCTTCTTTGTAAACTTGAGGACATGTTTGACATCAAGGGTGAGCTCTGTGGATCCATGAAAAAATGGCAGGTTGTCTACACTGATAATGAAGATGATATGATGATGGTTGGAGATGATCCATGGAATGAGTTCTGCAATGTTGTTAGGAAAATTTTCATTTACACTGCTGAAGAAGTGAAGAAGCTTTCGCCCAAGACTGGATTCCCAGGCCAGGAAGATTGCAAGTCCAGGAGACTAGATTCTGATGTGGCTGTGAATACTGAAGATCAGTCATCTATTGTTGGATCTGGGTGCTGA 2322 0.4535 MQYAPTLQHTTLPVTRYTTQFGTLLVPKRQSNSSSQAYPTLTADMNVMWSLVRIAAHLAAGLVRKSHRSTFSGYVSLYLSSEFLIVCILEDLVCDFIMAFMTSTQTPGGTHTGPSNDALYRELWHACAGPLVSVPREEERVYYFPQGHMEQLEASMHQGSEQQMPSFNLPSKILCKVVNVVLRAEAETDEVYAQITLLPEPNCQTEVTGPDPPVPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGQEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRHMRQLNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNKSSAWADSEWRSLKVQWDEPSTILRADRVSPWELEPLVTTNPPNSQPTQRNKRTRPPALPSSVPDSSAQGMWKSPTDLASFSYCDPQNGRDLYSSPNFSSTAPNFLGLGGNNSSGSIARSPAYWSNRVETSSGSFSPAAQKDNGEKRQTNGAGCRLFGIQLLENSNIEESPTLVTTSGKVGTDVSPPSLDADSEQHSEPSNIRSEVPSGSYDAEKSCLRSTQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLCKLEDMFDIKGELCGSMKKWQVVYTDNEDDMMMVGDDPWNEFCNVVRKIFIYTAEEVKKLSPKTGFPGQEDCKSRRLDSDVAVNTEDQSSIVGSGC* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00615 773 Gene3D - 222 327 IPR015300 -
Pte19g00615 773 MobiDBLite consensus disorder prediction 456 490 - -
Pte19g00615 773 SUPERFAMILY CAD & PB1 domains 651 726 - -
Pte19g00615 773 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 117 738 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte19g00615 773 MobiDBLite consensus disorder prediction 589 636 - -
Pte19g00615 773 MobiDBLite consensus disorder prediction 589 626 - -
Pte19g00615 773 MobiDBLite consensus disorder prediction 547 566 - -
Pte19g00615 773 Pfam AUX/IAA family 643 739 IPR033389 -
Pte19g00615 773 ProSiteProfiles B3 DNA-binding domain profile. 225 327 IPR003340 GO:0003677
Pte19g00615 773 Gene3D - 388 460 - -
Pte19g00615 773 FunFam Auxin response factor 388 460 - -
Pte19g00615 773 MobiDBLite consensus disorder prediction 547 569 - -
Pte19g00615 773 SUPERFAMILY DNA-binding pseudobarrel domain 216 354 IPR015300 -
Pte19g00615 773 Pfam Auxin response factor 351 433 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte19g00615 773 ProSiteProfiles PB1 domain profile. 649 742 IPR000270 GO:0005515
Pte19g00615 773 SMART B3_2 225 327 IPR003340 GO:0003677
Pte19g00615 773 FunFam Auxin response factor 644 738 - -
Pte19g00615 773 CDD B3_DNA 223 325 IPR003340 GO:0003677
Pte19g00615 773 FunFam Auxin response factor 223 327 - -
Pte19g00615 773 Pfam B3 DNA binding domain 225 326 IPR003340 GO:0003677
Pte19g00615 773 MobiDBLite consensus disorder prediction 454 490 - -
Pte19g00615 773 Gene3D - 644 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00615 Pte-Chr19 4879994 4889439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00615 101 767 B3 DNA Binding Superfamily AT1G59750 70.149 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte19g00615 AUX_IAA 2.6e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00615 K14486 - qsa:O6P43_031441 1072.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00615 19 4879994 4889439 Pte19g00615 19 4879994 4889439 RCT