Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00611 ATGAGTCATGATGAGAGGTTGGAATTTGATAGGTCAGTAAGTTTTGCTGGGGAGACAGAGAGTTTCAGGGAGCCATTGCTTTCAAGGAGGAGGACAAACACCACATCTCAGATTGCTATTATTGGTGCCAAATTCTGTAACATTGAGAGCCTTGACTATGAGATCATTGAGAACGATCTTTTCAAGCAGGACTGGAGGTCCAGGACAAAGAGTGAGATATTTCAATATATCACCCTTAAATGGACTCTTGCACTACTTATAGGTTTAGGCACAGGTCTTGTTGGCTGCTTCAGTACCTTTGCTGTGGAGAATATTGCTGGACAAAAGCTCCTCCTTACCGACAGTCTCATGCTCAAGGAAAAGTATGTTAGAGCGTTTGCTTCATTTGCTGGTTGCAACATGGTTCTAGCCATTCTTGCTGGTTCCCTTTGTGCTTATATTGCTCCTGCAGCAGCAGGCTCTGGCATACCTGAGGTCAAGGCATACCTTAATGGCGTTGATGCACACTCTATATTGGCTCCCAGTACCCTCTTTGTTAAGATTATTGGTTCTATTCTTGGAGTTGCTGGTGGTTTTATTGTGGGAAAGGAAGGGCCTATGGTACACACCGGAGCTTGCTTAGCTTCGTTACTTGGACAGGGCGGTTCTCGTAGATATCATCTAACCTGGAAATGGCTCAGACACTTTAAGAACGATCGAGATCGTCGGGATTTGATCACCTGTGGCGCAGCTGCTGGGGTAGCAACAGCTTTCCGAGCACCTGTTGGTGGTGTTCTTTTTGCACTCGAAGAAGCTGCTTCTTGGTGGAGAAGTGCTCTTCTATGGCGATCATTCTTCACAACCGCCGTAGTAGCAGTAGTAATAAGAAGTTTTGTTCAATTTTGCCGCGGAGGATCATGCGGACTATTCGGGGAAGGAGGCCTCATTATGTTTGATTTTAACTCAGCAAAGCCTGGTTACAACATCACTGACATTTTGGCAGTCATACTTGTTGGAGTCATTGGAGGTGCTTTGGGAAGCCTCTATAACTATTTTGTTGATAAGGTCCTTCACACTTACAGCGTCATTAATGAGAGAGGTCGTACTGTGAAGGTTATGCTTGTAATCCTCATCTCTCTTTTGACATCTTTTTGTTCTTTTGGCCTCCCTTGGTTTTCACCTTGCATCCCTTGCCCTGATGCCCTTGGTGATCAGTGTCCTACTGTTGGTCGGTCTGGTAACTACAAAAACTTCCAATGTCCACCTAATCATTATAATGATCTTGCCTCCCTCTTTTTCACAACCAATGATGATGCTATCCGAAACTTGTTTTCCTCTGATTCTTCCAAGGAATTTCAACTTTCTTCCCTTGTGATATTCTTTATTGCTATAAATTTCTTGGGAATTATCACTTACGGTATTGCTCTTCCTTCTGGACTCTTCATCCCTGTAATACTTGCTGGATCATCATTTGGCCGCCTTATAGGGATCCTTCTGAACCCATTAACCAATCTTGGTACTGGTTTCTTTGCTCTCCTTGGAGCTGCATCATTCCTTGGTGGAACGATGAGAATGACTGTGTCTATCTGTGTCATACTTCTTGAATTGACAAATGATCTTCCAATACTCCCATTGGTAATGCTGGTTCTCCTTACTTCGAAAACTGTGGCCGACTGTTTCAACCACGGTGTGTATGATCAGATTGTGAAAATGAAAGGCTTACCTTTTCTTGAAGCACATCCAGAACCATACATGAAACACTTAGTTGCAAGTGATGTTGTGTCTGGTCCTTTAATTTCATTTTCTGGGGTCGAAAAAGTGGGAAACATCTTACATTTCCTGAAGATAACACGCCACAATGGTTTCCCTGTGATTGATGAGCCTCCTTTCTCAGACGCTCCTGAATTGTGTGGTCTGGTTTTGAGGTCTCATTTGATAGTACTTCTCATGGGAAAGAATTTCACCAAGAACCAGGTGATGACTGGTTCTGTTATCATGAGGAGATTCAAGGCACGTGATTTCGCAAAAGCCGGATCAGGGAAAGGCCCTAAGCTGGAGGATTTGGATATCGGTGAAGAAGAAATGGAAATGTATGTTGATCTTCATCCTATCACTAATGCATCACCTTATACAGTGGTGGAAACTATGTCTCTGGCAAAGGCATCTGTGCTCTTCCGGGAGCTTGGACTAAGACACATGCTGGTTGTTCCAAAGACCCCAGGAAGACCTCCCATTGTTGGAATCCTAACCAGGCATGACTTCATGCCAGAGCATGTGTTGGGGCTTTATCCACACTTCGACCCCCACAAACGTGGAGCTTCAAGAAGCTCTCACATATTACTGTAA 2325 0.4404 MSHDERLEFDRSVSFAGETESFREPLLSRRRTNTTSQIAIIGAKFCNIESLDYEIIENDLFKQDWRSRTKSEIFQYITLKWTLALLIGLGTGLVGCFSTFAVENIAGQKLLLTDSLMLKEKYVRAFASFAGCNMVLAILAGSLCAYIAPAAAGSGIPEVKAYLNGVDAHSILAPSTLFVKIIGSILGVAGGFIVGKEGPMVHTGACLASLLGQGGSRRYHLTWKWLRHFKNDRDRRDLITCGAAAGVATAFRAPVGGVLFALEEAASWWRSALLWRSFFTTAVVAVVIRSFVQFCRGGSCGLFGEGGLIMFDFNSAKPGYNITDILAVILVGVIGGALGSLYNYFVDKVLHTYSVINERGRTVKVMLVILISLLTSFCSFGLPWFSPCIPCPDALGDQCPTVGRSGNYKNFQCPPNHYNDLASLFFTTNDDAIRNLFSSDSSKEFQLSSLVIFFIAINFLGIITYGIALPSGLFIPVILAGSSFGRLIGILLNPLTNLGTGFFALLGAASFLGGTMRMTVSICVILLELTNDLPILPLVMLVLLTSKTVADCFNHGVYDQIVKMKGLPFLEAHPEPYMKHLVASDVVSGPLISFSGVEKVGNILHFLKITRHNGFPVIDEPPFSDAPELCGLVLRSHLIVLLMGKNFTKNQVMTGSVIMRRFKARDFAKAGSGKGPKLEDLDIGEEEMEMYVDLHPITNASPYTVVETMSLAKASVLFRELGLRHMLVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHFDPHKRGASRSSHILL* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00611 774 SUPERFAMILY Clc chloride channel 58 573 IPR014743 -
Pte19g00611 774 CDD CBS_pair_voltage-gated_CLC_euk_bac 583 750 - -
Pte19g00611 774 PRINTS Chloride channel signature 244 263 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 557 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 180 199 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 149 166 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 PRINTS Chloride channel signature 469 489 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 SUPERFAMILY CBS-domain pair 573 748 IPR046342 -
Pte19g00611 774 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 27 754 - -
Pte19g00611 774 Pfam Voltage gated chloride channel 137 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte19g00611 774 CDD ClC_6_like 49 570 - -
Pte19g00611 774 Gene3D Clc chloride channel 72 571 - -
Pte19g00611 774 Gene3D - 572 754 IPR046342 -
Pte19g00611 774 PRINTS Plant CLC chloride channel signature 54 62 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte19g00611 774 PRINTS Plant CLC chloride channel signature 279 289 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte19g00611 774 PRINTS Plant CLC chloride channel signature 265 273 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte19g00611 774 PRINTS Plant CLC chloride channel signature 421 437 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte19g00611 774 PRINTS Plant CLC chloride channel signature 297 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte19g00611 774 ProSiteProfiles CBS domain profile. 697 761 IPR000644 -
Pte19g00611 774 FunFam Chloride channel ClC3 72 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00611 Pte-Chr19 4839408 4843452 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00611 3 763 Ion Channels AT5G49890 73.117 0.0 1116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00611 K05016 - jre:108988922 1230.31