Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00605 ATGAAGAAGGTGAAACTTCAGTTCATCACCGGTCATACAGAAAGGAAAGAATGCTTCCGGAAGGGGAAGATGACTTTCATGAAGGTGGCCAAAGAGCTGAACACCTTGCGTGGAGTTGAGGGAGGTGTGATTGTCTACAGTCCATACAGCTGGGAACCTGATGTCTGGCCTAATGAAGTTGATGATGTCCAGAATACACTCTCTGAGTTGAATCGAATGCAAGAGCAAGAAGATGCTGACTCAAGAGACATTCCTTCAGGAAGGTATTGA 270 0.4556 MKKVKLQFITGHTERKECFRKGKMTFMKVAKELNTLRGVEGGVIVYSPYSWEPDVWPNEVDDVQNTLSELNRMQEQEDADSRDIPSGRY* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00605 89 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 48 IPR002100 GO:0003677|GO:0046983
Pte19g00605 89 Gene3D - 12 85 IPR036879 GO:0003677|GO:0046983
Pte19g00605 89 SMART madsneu2 1 58 IPR002100 GO:0003677|GO:0046983
Pte19g00605 89 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Pte19g00605 89 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00605 Pte-Chr19 4763491 4763881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00605 2 83 Type I MADS-box Gene Family AT3G05860 33.333 6.59e-12 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte19g00605 SRF-TF 8.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00605 - - ecad:122610879 75.0997