Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00601 ATGGAACTTTCAAGTCAAGAAGGGGAGATCCCGATGCCTATAAACAGTACATTTGGTGGGGGACATGGCCATGACCATGGGCACATGATTCATCATGACCCTCCACCACCTCATAACTACATCATGTCATCCTCAGCAAATCAAAACCCTTCCAATGGAACACCAATTCAAACAAGCATGGATGATCACGGGCCCTACAAGAAAGTTGTAAATGTCAGGTACAGAGAATGCCTCAAGAATCATGCAGCTGCCATGGGAGGCAATGCCACTGATGGTTGTGGTGAGTTTATGCCTACTGGAGAAGAAGGAACCATAGAAGCCTTGACCTGCTCAGCCTGCAATTGTCACAGAAACTTCCACAGAAAAGAGATAGATGGCGAGCCATCTCCATATGACTGCCACCACAACTCACACCCCAATAGGGTTGGGAGGAAATTCATCTTTGGCCACCATCACAAGAACATGCTGGCTCACGAGGCACTGGGATACCCTACAGGCAACATTGTACCTTCAAGAACAATAGTGCCTCACCACCAAATGATACTGCCCTACAACATGGGGTCCCTACCTTCTGAGTCTGATGAACAAGATAATGGAGGAGGCAATGGTGGTGGTTTTGTGGCTAGACCTACTCAGCTAGTGAAGAAAAGGTTCAGGACTAAATTCACTCAAGAGCAGAAAGAGAAAATGCTGAACTTTGCTGAGAAAGTTGGGTGGAAAATTCAGAAGCAAGAAGAATCTGTGGTGCAACAGTTCTGTCAAGAGATAGGAGTTAAAAGAAGAGTTCTCAAGGTTTGGATGCATAACAACAAGCACAGCCTAGCCAAAAAGAACTCCTCCACTTCTTAA 849 0.4582 MELSSQEGEIPMPINSTFGGGHGHDHGHMIHHDPPPPHNYIMSSSANQNPSNGTPIQTSMDDHGPYKKVVNVRYRECLKNHAAAMGGNATDGCGEFMPTGEEGTIEALTCSACNCHRNFHRKEIDGEPSPYDCHHNSHPNRVGRKFIFGHHHKNMLAHEALGYPTGNIVPSRTIVPHHQMILPYNMGSLPSESDEQDNGGGNGGGFVARPTQLVKKRFRTKFTQEQKEKMLNFAEKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHSLAKKNSSTS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00601 282 Gene3D - 208 277 - -
Pte19g00601 282 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 74 123 IPR006456 -
Pte19g00601 282 MobiDBLite consensus disorder prediction 43 59 - -
Pte19g00601 282 FunFam Zinc-finger homeodomain protein 2 207 276 - -
Pte19g00601 282 MobiDBLite consensus disorder prediction 43 63 - -
Pte19g00601 282 SUPERFAMILY Homeodomain-like 212 276 IPR009057 -
Pte19g00601 282 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 73 124 IPR006456 -
Pte19g00601 282 Pfam ZF-HD protein dimerisation region 71 124 IPR006456 -
Pte19g00601 282 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 273 - -
Pte19g00601 282 MobiDBLite consensus disorder prediction 189 210 - -
Pte19g00601 282 NCBIfam homeobox domain, ZF-HD class 215 271 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00601 Pte-Chr19 4747120 4749408 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00601 1 279 ZF-HD Transcription Factor Family AT1G14440 47.452 6.44e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pte19g00601 ZF-HD_dimer 3.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00601 - - qsa:O6P43_012111 448.743