Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00600 ATGGACGAAACCCTAGGTCCCGCTTCTGAAACACTTACAGCTAATGCTCCTGCTCTTGCTTCCGATGAAGAAAAAGAAAACCTGAATAGTGATCAAGCAATGCCTGACGCTGCTGAGGACCTAAGCAAACCTTCGGATTCCGATTCTGGAAGTTCGGACGCTGATTCTGATGACGAAGATCAGCAAAAGTTCGAGCTTCATACCCTGGAATCCGAGCTGTCCTATAATCCTTCTAACTACGACGCTCATGTCAAATATATAAGGCTTCTGAGGAAAATGGGTGAGGTTGAGAAAGTGAGAAAAGCAAGAGAAGCTATGAGTTTGTTGTTTCCTTTGACGCCTACAATGTGGCAAGAATGGGCTAAAGATGAAACCACTCACAACAAAGGGACTGAGACCTTATCTGTGGTTGAAAACATATATGAGCGTGGCACGTCTGAATATCTGTCTGTCTCTTTGTGGGCTGACTATCTAAACTTCATGCAAGAGTTCGATCCAGAAGTGTTACAGTGTTCTCCACATGGTGTTTCAAAGGCTCGAGAGTTATTTGAGCGAGCCTTGATTGCTTGTGGCTTGCATCTTGTGGAAGGCAACAGAATATGGGAGTTATATATAGAATTCGAGCAAGCTATCCTTTACACCATTGATGAGACCAACAGCGAGGAAAAAGAAAAGCAGATACAACGTATTAGGAGCATATTCCAGCGTCAGTTGTCTGTGCCCCATGTTGACATTAAGAAAACACTTCTAGCCTACAAGGCTTGGGAGGCAGAACAGAACAAAGTACATGATATTGAATCTCATGATGTCGATGACATTCCTTCCAATGTTGCTTCAGCATACCAGAAGGCCTTGGAGATGTACACTGCTCGCACTCATTTTGAGGAACAGATCTCTAAGAAGGATCTATCTGGTGCAGAGAGATTACAACAGTACATGATGTACTTGAAATTTGAGCAGTCTTCTGGAACACCAACGAGGGTTCAAGTTCTGTATGAGCGAGCTGTCACTGAGTTACCAATATCATCTGATCTCTGGCTAGATTATACTAGTTATTTAGACAAAACTTTAAAGGTTGGGAGTATTGTAAGAAATGTATATTCAAGAGCCACAAGGAACTGTCCTTGGGTCGGAGAACTTTGGGTTCGGTATTTGCTGTCCTTGGAACGTTCTCATGCCTCTGAGGAAGAGATAGTGACTGTCTTTGAGAATTCTCTACAATGCACCTTAGCGTCAGTTTATGAGTATAAGGATTTATTCCTCACACGGATAGATGGTTTAAGGCGAAGAATCTCTTTCAATAAAGGAGGAGAGGACATTCTGGATTACAGGTTATTAAGAGAAACTTTCCAGCGTGCATCAGACTACCTGTCACCTCACTTGAAGAACACACAGGATATGCTGCAGTTGTATGCTTATTGGGCCCATCTAGAGGTGAAATTGGCAAGGGACATAAGTGGAGCTCGTGGGGTTTGGGAAAGTCTTCTCAAGATCAGTGGTTCAGTTCTGGAGACATGGATAAGCTACATTGCAATGGAAACTGAGTTGGGTCATATAAACGAAGCTAGGTCCTTATACAAGCGGTGTTACAGCAAAAGATTCCCTGAAACAGGTTCAGAGGATATCTGTTATGCTTGGTTGCAATTTGAGAGGAAGTTTGGTACCCTGGAAGATTTGGACCATGCTTCACTGAAGGTTACTCCTCGTTTGCTAGAGCTACAGTTGTTTAGGCTACAGCAGGAAACAAAGCCAACAGATGAAAGGGATATTACTGTGAAGAGGAATGCTCCTCAAAAGAGAAAGCCAGAATCAGACACAGGCGAACATCAATCTCCAGCAAAGAGGAAAAAAGATGCACCTCAGAACAAAAAATCCCTAGGAAAGGATAAAGCTTGGCGTACAGTTGAATTAACAAAAAATGACGAGAACAGTGCAAGGGATTCTGAAGCTGAAATTTTACCTAAACGAAAAACTGCATCTGAGAAAAACAGAGGCTTCACTGACCAGTGCACTATCTTTGTATCCAACCTCGATATTAAGTCAAGTTCTGAAGATATCCGCAAGTTCTTTAGTGATGTTGGTGGAGTAGTTGCTGTTCGTGTTCTGCATGACAAGTTCACTGGCAAATCAAGGGGATTAGCTTACGTGGATTTCTCAGATGAGGAACACCTGGCTGCTGCGATAGCAAAGAATAAACAACATTTGATGGGAAAGAAATTGAGTATTGCTAGGTCAAATCCAAAACAAGGCAGAAATAAAGCTTCTGGTAACAGATCTACGAAAGAAAACGATGTTATAAATCAGTCCGGTATGTCGGAGGGTTCCAAGTCTAGGGAATCTGATAATACCTCTAAGGGTGCTACACGAGAACCACATTTTACTTCAAGAAAAAGTGGCATATTGGACCTGAAAGGGAAAAACACATTTGCGGTGCCTAGAAATGTCAAACCACTTGGTTGGACAACAAGTGAACCGAAAAGTGAAGACCGAGATGAGCAGCCAAAATCCAATGATGAATTTAGGAAGTTGTTTCTGAAAGACAAGTAG 2547 0.4236 MDETLGPASETLTANAPALASDEEKENLNSDQAMPDAAEDLSKPSDSDSGSSDADSDDEDQQKFELHTLESELSYNPSNYDAHVKYIRLLRKMGEVEKVRKAREAMSLLFPLTPTMWQEWAKDETTHNKGTETLSVVENIYERGTSEYLSVSLWADYLNFMQEFDPEVLQCSPHGVSKARELFERALIACGLHLVEGNRIWELYIEFEQAILYTIDETNSEEKEKQIQRIRSIFQRQLSVPHVDIKKTLLAYKAWEAEQNKVHDIESHDVDDIPSNVASAYQKALEMYTARTHFEEQISKKDLSGAERLQQYMMYLKFEQSSGTPTRVQVLYERAVTELPISSDLWLDYTSYLDKTLKVGSIVRNVYSRATRNCPWVGELWVRYLLSLERSHASEEEIVTVFENSLQCTLASVYEYKDLFLTRIDGLRRRISFNKGGEDILDYRLLRETFQRASDYLSPHLKNTQDMLQLYAYWAHLEVKLARDISGARGVWESLLKISGSVLETWISYIAMETELGHINEARSLYKRCYSKRFPETGSEDICYAWLQFERKFGTLEDLDHASLKVTPRLLELQLFRLQQETKPTDERDITVKRNAPQKRKPESDTGEHQSPAKRKKDAPQNKKSLGKDKAWRTVELTKNDENSARDSEAEILPKRKTASEKNRGFTDQCTIFVSNLDIKSSSEDIRKFFSDVGGVVAVRVLHDKFTGKSRGLAYVDFSDEEHLAAAIAKNKQHLMGKKLSIARSNPKQGRNKASGNRSTKENDVINQSGMSEGSKSRESDNTSKGATREPHFTSRKSGILDLKGKNTFAVPRNVKPLGWTTSEPKSEDRDEQPKSNDEFRKLFLKDK* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00600 848 SUPERFAMILY RNA-binding domain, RBD 667 760 IPR035979 GO:0003676
Pte19g00600 848 MobiDBLite consensus disorder prediction 823 848 - -
Pte19g00600 848 SMART hat_new_1 517 552 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 483 515 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 132 163 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 225 258 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 94 126 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 174 210 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 323 355 IPR003107 GO:0006396
Pte19g00600 848 SMART hat_new_1 358 390 IPR003107 GO:0006396
Pte19g00600 848 MobiDBLite consensus disorder prediction 1 61 - -
Pte19g00600 848 MobiDBLite consensus disorder prediction 778 799 - -
Pte19g00600 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 672 740 IPR000504 GO:0003723
Pte19g00600 848 MobiDBLite consensus disorder prediction 741 848 - -
Pte19g00600 848 Pfam Lsm interaction motif 831 846 IPR008669 -
Pte19g00600 848 SMART rrm1_1 671 743 IPR000504 GO:0003723
Pte19g00600 848 Gene3D Tetratricopeptide repeat domain 69 268 IPR011990 GO:0005515
Pte19g00600 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 670 747 IPR000504 GO:0003723
Pte19g00600 848 MobiDBLite consensus disorder prediction 745 777 - -
Pte19g00600 848 SUPERFAMILY TPR-like 70 561 IPR011990 GO:0005515
Pte19g00600 848 Gene3D Tetratricopeptide repeat domain 304 585 IPR011990 GO:0005515
Pte19g00600 848 MobiDBLite consensus disorder prediction 584 661 - -
Pte19g00600 848 PANTHER PRE-MRNA PROCESSING PROTEIN PRP39-RELATED 46 760 - -
Pte19g00600 848 Gene3D - 586 760 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00600 Pte-Chr19 4732468 4740119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00600 670 742 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 2.76e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00600 K22611 - qsu:112015920 985.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00600 19 4732468 4740119 Pte19g00600 19 4732468 4740119 RCT