Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00596 ATGTCAGACATGCGCCTGTCTGATCCAAGCAAGCTGCATTTGAAGAAGGAGCTTACTCAAATTCGTAAGGCTGCTCGCGTGTTAAGGGATCCTGGTACTACTTCTTCGTGGAAGTCACCTTTGAGCTCATCAAGATCTGTGGCAGCTCTTTCTGCTTCTGTTTGGAAAGGAAATTATGAAAGTGAGACTAGAAGATTCAACGGAAACTCTCAGCTCGAGTCTCAGTTCTCTCTTCCAAGTGGGGATAATAGTAATAGTGGAAGAGAGAAGAGGGTGTTCTTGTACAATTGGAAAAACCAGAGGTCTTCTAGTGAGAAAAGTGTAATGGCCAGGAATGACGTGGATGATGAAGATGATGGCTGCAATGACGGGTCTTCTCTTTTAGAAAGCTTCGAGGATAGTTTGAGTGATGCTCGTAATGGAGGTGGTGATTCCAAGAGTGATTCTTACTTGGGTGGTGAGAGCCGTTCTTCAATCTTAAGACACAGAGATGCAAATCTTATTTTGTCGGGGACTCCAACAGCGAAAAGGGCAATGTGGGGTGATAAAAAATTTAAGAAAAGCAACAAAAAATTTGGCATTTTGTCAAGATACCAACAAAGGGATGCCACACTAGGTAGGAATTATGTCAATTCGAAAACTTTGCTCGAGGGCCATCACTCAATCAGTTTGAGCAAGGTTGAGTCAGTTGAGCAGTCTGATGATACTGAGGACTATAGTAATTCTGAGGATTTAAGGAGAATTGCAGGGGCATCTCCTCCACTTTTGAAGCTCAAGCGCAAAAATTGGTCTCGTGCCTCTGGTAAGTTTTTAAGAACTAGCAGAAAAGAGGACTCTTCTTATTCTTATAGCACACCAGCGCTGTCAACTAGTTCTTTTAATAGGTATGGTCAGCGAAATCCGAGTACAATTGGTTCCTGGGATGGCACTGCAACTTCAGTGAATGATGGTGATGATGAGATTGATGATGAGTTCGATGTGCGGGGGCGGCACGGTTGTGGGATTCCATGTTACTGGTCTAAGAGGACTACTCCCAAGCACAGAGGCCTCTATGGGAGTTGTTATTCACCTTCTCTGTCAGATACTATAAGGAGAAAGGGAAGTATCATACTTTGTGGAAGTCAGACTATCAATCCTAGGCGCAGGAGATCAGTACCAAGCTGTAACAAGCGTAGAAGTGCTTCAAGAAGTGCTCAAGGTGTTTTGCCGTTGCTTACCAACAGTGCTAATGGCAGAGGTTCATCTTTAGGCACTGTAGAGAGTGATGATGAACTCTCAACTAACTTTGGGGAGCTTGAACTAGAGGCTTTGAGCAGACTGGATGGAAGAAGGTGGTCTACAAGCTGCCAGAGTGAAGGATTAGAGATCGTAGCTCTAAATGGTGAAGGGGATGACGATGGTACGCCAGATAATATCAGAAGTTTCAGCCAAAAGTACAAACCTATGTTTTTTAGCGAATTGATTGGCCAGAATATTGTGGTCCAGTCACTTGTTAATGCTATTGTGAGGGCACGGGTTGCACCTGTATATCTTTTTCAGGGTCCCCGTGGTACTGGGAAAACATCAATGGCAAGGATCTTTGCTGCTTCCTTGAATTGTATGTCTCCGGATGAGAATAAGCCATGTGGTTACTGTATGGAATGTACTGAATTCATTTCTGGAAAAAGCAAGTATCTGATAGAAGTTGATGGAACCAATAAGAAAGGTATTGATAGAGTTAGACATCTTTTAAGAAAATTGGCAGTGGTTGCATTGACAGGTTCTTCACGGTTTTTGGTTTTTGTTATTGACGAGTGTCACTTGCTGTCCTCAAAGACATGGCTGGCATTGCTAAAATTTCTAGAAGAACCACCACGGAGAGTTGTGTTTATATTTGTAACCACTGATCTTGAAAATGTTCCACGGACGGTACAGTCCCGTTGTCAAAAGTACATCTTTAATAAAATCAAAGATGGTGATATTGTTGCTATGTTGAGAAAAATATCTGCTGATGAAAACCTAGATGTTCAGCCAGATGCACTGGAGTTGATTGCTCTGAATGCAGATGGGTCACTTAGAGATGCAGAAACCATGTTGGAACAGTTAAGCTTGCTTGGTAAAAGAATCACTACATCTCTTGTTAATGAACTTGTAGGTGTTGTATCAGATGAAAAATTATTGGAACTTCTTGAGTTAGCTATGTCATCCGACACCGCAGAGACAGTGAAAAGAGCTAGAGAGCTTATGGACTCTGGAGTTGATCCAATGGTCTTGATGTCTCAATTGGCCAGTCTCATTATGGATATCATTGTGGGAACATACAATATGTCCAATAACAAATATGGTGATCAGTTATTTGGCGGACGAAGTTTGACCGAATCTGAAATCGAGAGATTAAAGCATGCCTTGAAGCTTCTATCAGAGGCCGAGAAGCAGTTGAGAATTTCAACTGAGCGTTCAACATGGTTCACTGCAACACTGTTACAGCTTGGTTCAATGCCTTCTCCAGATGCTTCACTATCAAGCAGCAGCAGAAGGCAGAGCTGCAAGACTGAAAATGATCCATCAAGTGCTTCAAGAGAAGCTGCTGGAAGCAGGCAGAACGTTAGTTGTCAGAGTATGCCACGTCAATCAACTTCCCCAGCATCATTGCAGATTGTATCAAATGTAAACTTCAATTGTCATGGGGATTTACCATCAAAATCTGACGGTTTTGGACCAAAATCTAGGCCAGCAATTAGCCCTGTTATTGATGGCGGATCTTCAGCTGTGTCTGGTGATGATGTTGGAAACATGTATAGATGCGTTGGCATGGAAAAATTGTGTGATATATGGGCACTTTGTATTGAAAGATGTCATTCAAAGACACTGAGGCAATTGCTACACACCCACGGAAAGCTTGTGTCCACATGTGAAGTTGAAGGTGTAATGGTTGCATATGTCGCATTTGAGGATGTAAATATTAAACTTAGGGCTGAAAGGTTTTTGAGCAGCATTACAAATTCCATGGAAATGGTACTTAGACAAAATGTGGATGTCAGAATAATACATTTGCCAAGAAGTGGAGCTTCAGCAAATAGTGAAAGTCTAGGCAACCTTCCCATTCTGAAACAGCCAGAGTCAACCATGGGAAATAGAAAGGAATTGCAAGTGCATACAAATGAAAAAGATGCTCATACTAGTTTTCCATTTCGGGATGGGAAGTTTCCATTGGGTGGTGATTCATCTGAACCTTTGGCTGAAGGTGATACCCTAAGTGCAAGAGAGAGGAAGCAAGATATACCCATGCAGAGAATAGAATCAATTATTCGTGAACAAAGGCTTGAAACTGCATGGTTACAGACTGTAGAGAAGGGAACCCCTGGATCATTGAATCATTTGAAACCTGAGAAGAATCAGGTCCTTCCTCAGGATGGTGTCTACTATAAAGATCAAATGGAGTCCATGGACTCAACCGGATTTTCTTCACAGCATTGGGAAGATGAATTGAATCGTGACCTTAAGCTCTTGAATATTAACAGTGGGAGCAATCTGCAGAAGGACAAGATTGGCAGGAGGCCTGAACGCTTTCCCATGTCTCCAAGTTTATTGCACAACAACAGTTTGGCTACCTGTTCTAGCAAGGATAACCTGGGATATGAATCAAGCTCGGGAAATGGAGGCTGCAGTGGATTTTTCTGTTGGAATAATTCTAAACCTAGTAGAAGGGGAAAGGTGAAGGTAACCCCGGTCGGAAGATATAGAAATGGGCGTTTTTCATTGTTTGGTGAGTGTGTTAGAAAGCCGAAGAACAAAGACAGCAGGTAG 3786 0.4239 MSDMRLSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAALSASVWKGNYESETRRFNGNSQLESQFSLPSGDNSNSGREKRVFLYNWKNQRSSSEKSVMARNDVDDEDDGCNDGSSLLESFEDSLSDARNGGGDSKSDSYLGGESRSSILRHRDANLILSGTPTAKRAMWGDKKFKKSNKKFGILSRYQQRDATLGRNYVNSKTLLEGHHSISLSKVESVEQSDDTEDYSNSEDLRRIAGASPPLLKLKRKNWSRASGKFLRTSRKEDSSYSYSTPALSTSSFNRYGQRNPSTIGSWDGTATSVNDGDDEIDDEFDVRGRHGCGIPCYWSKRTTPKHRGLYGSCYSPSLSDTIRRKGSIILCGSQTINPRRRRSVPSCNKRRSASRSAQGVLPLLTNSANGRGSSLGTVESDDELSTNFGELELEALSRLDGRRWSTSCQSEGLEIVALNGEGDDDGTPDNIRSFSQKYKPMFFSELIGQNIVVQSLVNAIVRARVAPVYLFQGPRGTGKTSMARIFAASLNCMSPDENKPCGYCMECTEFISGKSKYLIEVDGTNKKGIDRVRHLLRKLAVVALTGSSRFLVFVIDECHLLSSKTWLALLKFLEEPPRRVVFIFVTTDLENVPRTVQSRCQKYIFNKIKDGDIVAMLRKISADENLDVQPDALELIALNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIVGTYNMSNNKYGDQLFGGRSLTESEIERLKHALKLLSEAEKQLRISTERSTWFTATLLQLGSMPSPDASLSSSSRRQSCKTENDPSSASREAAGSRQNVSCQSMPRQSTSPASLQIVSNVNFNCHGDLPSKSDGFGPKSRPAISPVIDGGSSAVSGDDVGNMYRCVGMEKLCDIWALCIERCHSKTLRQLLHTHGKLVSTCEVEGVMVAYVAFEDVNIKLRAERFLSSITNSMEMVLRQNVDVRIIHLPRSGASANSESLGNLPILKQPESTMGNRKELQVHTNEKDAHTSFPFRDGKFPLGGDSSEPLAEGDTLSARERKQDIPMQRIESIIREQRLETAWLQTVEKGTPGSLNHLKPEKNQVLPQDGVYYKDQMESMDSTGFSSQHWEDELNRDLKLLNINSGSNLQKDKIGRRPERFPMSPSLLHNNSLATCSSKDNLGYESSSGNGGCSGFFCWNNSKPSRRGKVKVTPVGRYRNGRFSLFGECVRKPKNKDSR* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00596 1261 SMART AAA_5 506 668 IPR003593 GO:0016887
Pte19g00596 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 498 696 IPR027417 -
Pte19g00596 1261 CDD AAA 488 646 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 1046 1079 - -
Pte19g00596 1261 Pfam DNA polymerase III, delta subunit 489 649 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 379 400 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 134 155 - -
Pte19g00596 1261 FunFam DNA polymerase III subunit gamma/tau 650 712 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 70 89 - -
Pte19g00596 1261 SUPERFAMILY post-AAA+ oligomerization domain-like 720 821 IPR008921 GO:0003677|GO:0006260
Pte19g00596 1261 CDD HLD_clamp_pol_III_gamma_tau 649 712 IPR045085 -
Pte19g00596 1261 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 477 879 - -
Pte19g00596 1261 FunFam DNA polymerase III subunit gamma/tau 470 648 - -
Pte19g00596 1261 Gene3D - 713 827 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 226 246 - -
Pte19g00596 1261 Coils Coil 782 812 - -
Pte19g00596 1261 Gene3D - 651 712 - -
Pte19g00596 1261 Gene3D - 467 647 IPR027417 -
Pte19g00596 1261 Pfam DNA polymerase III subunits gamma and tau domain III 703 825 IPR022754 GO:0003887
Pte19g00596 1261 MobiDBLite consensus disorder prediction 104 123 - -
Pte19g00596 1261 MobiDBLite consensus disorder prediction 827 870 - -
Pte19g00596 1261 NCBIfam DNA polymerase III subunit gamma/tau 474 823 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00596 Pte-Chr19 4703326 4710267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00596 477 761 Core DNA Replication Machinery Family AT1G21690 23.810 4.09e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00596 - - qsa:O6P43_012104 1641.32