Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00593 ATGAGCAAAAACAACGAAGACTCCACCATCACCACCACCACCACCAACAAAACCTCTACACACACCAACGACGTCGATGATAAACCAGTTGATGATCACGAACATGACATGGTTATGCCTGGATTTCGCTTCCACCCCACTGAAGAAGAGCTTGTAGAGTTCTACCTTCGTCGTAAGGTTGAGGGCAAGCGTTTCAATGTTGAACTCATCACTTTCCTTGATCTTTATCGCTATGACCCATGGGAACTTCCTGCCATGGCAGCGATTGGAGAGAAGGAATGGTTCTTCTATGTCCCGAGAGACAGAAAGTATAGAAATGGTGACCGTCCGAACAGAGTTACAACTTCTGGGTACTGGAAGGCAACTGGAGCTGATAGAATGATCAGAAGTGAGAACTTCAGGTCAATTGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGCAAAGCACCTAAAGGCATCAGAACCAGTTGGATTATGAATGAGTATCGTTTGCCTCAACATGAAACTGAGAGATATCAAAAGGCAGAAATATCACTTTGCCGTGTGTATAAAAGAGCTGGCGTAGAAGACCATCCCTCACTCCCTCGTTGCCTCCCATCTAGGCCATCCTCATCAAGAACAGTACAACCTACTGATAGGAAGAGCAATGAAATTCTTCATCACAACATGAGTTTTGGTGGACAAACCCAACCGATTGATAAGGTGATGAAGAAAATGAATGAAGCAGATACTAGCACCAGTTCATGTTCAGATGTAACAACAGCTCTTGGGCTTTCCAAGCATAACAGTTCTGCTTTCCAAGTATTAGCTTCAGCAAACCCCCCAATGGGATTACCTTCTCCTATGGATGAGGATGGCTTGCTTATGCAGCAACCAAAACAAGCAGCAGCAGCATCTCTTGTCCCCACGAGTGGCGCCTTATTCATTGGGAATCCTTCTGTTTCTTCTACTAGCACAGCAGTCATAGAAGATTACCATAGATTAGTGGATTATCAACAGTACTACAATGTCAACAACCATCACAACCAGTTCTCTAATTTTGTAATGCAACCACAACCTTCGTCTCTCAATGTGCTACCAAGTTCACTTCCAACAACTTTCTCGGACAGACTGTGGGAGTGGAATTCTATGCCAGACGCCAACCGAGACTACAGCAATATGCCATTCAAGTAA 1173 0.4433 MSKNNEDSTITTTTTNKTSTHTNDVDDKPVDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPSRPSSSRTVQPTDRKSNEILHHNMSFGGQTQPIDKVMKKMNEADTSTSSCSDVTTALGLSKHNSSAFQVLASANPPMGLPSPMDEDGLLMQQPKQAAAASLVPTSGALFIGNPSVSSTSTAVIEDYHRLVDYQQYYNVNNHHNQFSNFVMQPQPSSLNVLPSSLPTTFSDRLWEWNSMPDANRDYSNMPFK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00593 390 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 263 - -
Pte19g00593 390 MobiDBLite consensus disorder prediction 198 212 - -
Pte19g00593 390 MobiDBLite consensus disorder prediction 1 20 - -
Pte19g00593 390 Gene3D NAC domain 47 188 IPR036093 GO:0003677|GO:0006355
Pte19g00593 390 Pfam No apical meristem (NAM) protein 40 164 IPR003441 GO:0003677|GO:0006355
Pte19g00593 390 MobiDBLite consensus disorder prediction 1 32 - -
Pte19g00593 390 MobiDBLite consensus disorder prediction 191 212 - -
Pte19g00593 390 SUPERFAMILY NAC domain 38 184 IPR036093 GO:0003677|GO:0006355
Pte19g00593 390 ProSiteProfiles NAC domain profile. 38 185 IPR003441 GO:0003677|GO:0006355
Pte19g00593 390 FunFam NAC domain-containing protein 35 47 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00593 Pte-Chr19 4661731 4663941 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00593 37 201 NAC Transcription Factor Family AT2G02450 92.121 2.75e-113 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte19g00593 NAM 3.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00593 - - qsa:O6P43_012101 487.263