Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00592 ATGAGCCACAACAACGAAGACTCCACCATCACCACCACCACCAAAACTTCTACGAACACCAACGACGTCGACGGTAAATCCGTCGATGATCATGAGCATGACTTGGTTATGCCTGGATTTCGCTTCCACCCCACTGAAGAAGAGCTTGTAGAGTTCTATCTTCGCCGTAAGGTTGAGGGCAAGCGTTTCAATGTTGAACTCATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCCATGGCAGCAATTGGAGAGAAGGAATGGTTCTTCTACGTCCCGAGAGACAGAAAGTATAGAAATGGTGACCGTCCCAACAGAGTTACAACTTCTGGGTACTGGAAGGCAACTGGAGCTGATAGAATGATCAGAAGTGAGAACTTCAGGTCAATTGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCGCCTAAAGGCCTCCGAACTAGTTGGATTATGAATGAGTATCGTTTGCCTCAGCATGAAACTGAGAGATATCAAAAGGCAGAAATATCACTTTGCCGTGTGTACAAAAGAGCTGGAGTAGAAGACCATCCCTCACTCCCTCGTTGCCTCTCATCTAGGCCATCTTCATCAAGAACTGTACAACCTGATAGAAAGCAGAATGAAGTACTTCATCACAACATGGGATTCGGTGAACAACACCAACAGATTGATAAGGTGATAATGAAAATGAATGAATCAGATAATAGCACTAGTTCATCATGTTCAGATGTAACAACAGCTCTTGGGCTTTCCAAGGACGACAGTTCTCCTTTACAAGTGCTAGCTACATCAGGAAACAACCCAATGGGATTAACTTCTCCTACGGATGAGGATGTCATCTTTATGCAGCAACCAAAGCATGCAGCTGCAGCCGCTCTAGTCTTCAGAAGTGGTGCCTTCTTCATTCGGAATCCTTCTGTTACTTCTCCTAGCACAGTCATGGACGATTACCATGGATTAGTGGATTACCAACAGTACTACACCAACAATCAACAGAATCAGTTCTCTAATATACTAATGCAACCGCCTCCGTTGGCTCTTAATGTGCTACCAAGTTCACTTCCAACAACTTTCTCGGGCAGACAATGGGGTTGGAATACTGAGAGATTTGAAACAGATGCTTTCAATGTTCTAGATTGTTGA 1161 0.4427 MSHNNEDSTITTTTKTSTNTNDVDGKSVDDHEHDLVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSENFRSIGLKKTLVFYSGKAPKGLRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLSSRPSSSRTVQPDRKQNEVLHHNMGFGEQHQQIDKVIMKMNESDNSTSSSCSDVTTALGLSKDDSSPLQVLATSGNNPMGLTSPTDEDVIFMQQPKHAAAAALVFRSGAFFIRNPSVTSPSTVMDDYHGLVDYQQYYTNNQQNQFSNILMQPPPLALNVLPSSLPTTFSGRQWGWNTERFETDAFNVLDC* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00592 386 ProSiteProfiles NAC domain profile. 36 183 IPR003441 GO:0003677|GO:0006355
Pte19g00592 386 Gene3D NAC domain 45 186 IPR036093 GO:0003677|GO:0006355
Pte19g00592 386 MobiDBLite consensus disorder prediction 1 29 - -
Pte19g00592 386 MobiDBLite consensus disorder prediction 189 209 - -
Pte19g00592 386 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 35 252 - -
Pte19g00592 386 MobiDBLite consensus disorder prediction 195 209 - -
Pte19g00592 386 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g00592 386 Pfam No apical meristem (NAM) protein 38 162 IPR003441 GO:0003677|GO:0006355
Pte19g00592 386 SUPERFAMILY NAC domain 36 182 IPR036093 GO:0003677|GO:0006355
Pte19g00592 386 FunFam NAC domain-containing protein 35 45 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00592 Pte-Chr19 4650514 4652737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00592 35 199 NAC Transcription Factor Family AT2G02450 92.121 1.35e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte19g00592 NAM 2.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00592 - - qsa:O6P43_012101 436.032