Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00574 ATGTCTCACATGCATGGAGATGATGCGGAGTATGCTGTAGAAGAAAATGAAATGGCAGAAGCTGAAGATGATATGTATTTCCGTAGTGTGATGGGCGACTCAGAGTCGGATGAGGACGAGGACGATTATGAGTTATTGATAACCCACACTACTGCTGCAGAAGCTAGAAGAGGAAAGGATATCCAGGGTATTCCTTGGGATAGGCTGAGTATTGATCGTGAAAAATATAGGCAGACTAGATTAGAGCAGTACAAGAATTATGAAAATATACCTCAATCTGGAGAAGATTCAGAAAAGATATGTAAGCCAACTCAGAAGGGGGGTAGGTATTATGAGTTTTGGCAAAATACTCGATCTGTAAAATCAACTATTCTTCACTTCCAATTGAGGAACTTGGTTTGGTCAACTTCGAAGCATGACGTCTATCTTGTCTCAAATTACTCAATTATTCACTGGTCTTCGCTAAATTCTAAGAGATCTGAAGTTCTTAACGTTTCTGGACATGTGGCTCCATGTGAGAAACATCCTGGAAGTTTGTTGGAAGGATTTACTCAAACACAAATCAGTACACTGGTTGTCCGAGATAATTTGATGGTTGCTGGAGGGTTTCAGGGAGAACTCATCTGCAAGTATCTAGATCGGCCTGGAGTTAGCTTCTGTTCTAGAACAACATATGATGACAATGCAATCACTAATGCGGTTGAGATATATGATCATCCTAGTGGTGCAGTTCACTTCATGGCTTCAAATAATGACTGTGGGGTAAGGGACTTTGATATGGAGAGGTTTCAGCTTTCTAAGCATTTCTGCTTTCCCTGGCCTGTAAATCATACAGCTTTGAGTCCCGATAGCAAACTTGTGACCATTGTTGGTGACAACCCAGAAGGACTCCTAGTAGATTCTCAAACAGGAAAGACTGTTTCACCTTTATGTGGACATTTGGATTATTCATTTGCATCTGCATGGCATCCTGATGGCCGCATATTCGCTACTGGAAATCAAGACAAGACATGTCGTATATGGGATGTTAGGAACTTGTCAACATCTATTGCTGTACTGAAGGGTAACATTGGAGCTATTCGTTCTATTCGTTTTACATCTGATGGAGGTTTCATGGCCATGGCTGAACCAGCTGACTTCGTACATGTCTATGATACAAAGAATGGATTTGAGAAGGAGCAGGAGATAGATTTTTTCGGTGAGATATCTGGTGTATCTTTTAGCCCTGATACTGAATCCCTATTTATTGGAATCTCGGATCGCACCTATGGTAGCCTCCTTCAATACAACCGCTGCAAGTACTACATGTATCTTGACTGTTTGTAA 1326 0.4118 MSHMHGDDAEYAVEENEMAEAEDDMYFRSVMGDSESDEDEDDYELLITHTTAAEARRGKDIQGIPWDRLSIDREKYRQTRLEQYKNYENIPQSGEDSEKICKPTQKGGRYYEFWQNTRSVKSTILHFQLRNLVWSTSKHDVYLVSNYSIIHWSSLNSKRSEVLNVSGHVAPCEKHPGSLLEGFTQTQISTLVVRDNLMVAGGFQGELICKYLDRPGVSFCSRTTYDDNAITNAVEIYDHPSGAVHFMASNNDCGVRDFDMERFQLSKHFCFPWPVNHTALSPDSKLVTIVGDNPEGLLVDSQTGKTVSPLCGHLDYSFASAWHPDGRIFATGNQDKTCRIWDVRNLSTSIAVLKGNIGAIRSIRFTSDGGFMAMAEPADFVHVYDTKNGFEKEQEIDFFGEISGVSFSPDTESLFIGISDRTYGSLLQYNRCKYYMYLDCL* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00574 441 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 351 IPR001680 GO:0005515
Pte19g00574 441 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 185 422 IPR011047 -
Pte19g00574 441 SMART WD40_4 303 342 IPR001680 GO:0005515
Pte19g00574 441 SMART WD40_4 346 385 IPR001680 GO:0005515
Pte19g00574 441 SMART WD40_4 389 430 IPR001680 GO:0005515
Pte19g00574 441 MobiDBLite consensus disorder prediction 1 23 - -
Pte19g00574 441 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 7 440 - -
Pte19g00574 441 FunFam WD-40 repeat family protein 223 439 - -
Pte19g00574 441 Gene3D - 220 432 IPR015943 GO:0005515
Pte19g00574 441 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 345 - -
Pte19g00574 441 Pfam WD domain, G-beta repeat 305 342 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00574 Pte-Chr19 4546843 4552106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00574 298 422 Miscellaneous Gene Families AT5G08390 30.400 6.82e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00574 - - gmx:100788712 776.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte19g00574 19 4546843 4552106 Pte19g00574 19 4546843 4552106 RCT