Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00545 ATGGCTGACTCGGACAATGAGTCAGGAGGCGCATATGGGGTGGTTCGTGGTAGCTGCAGTGAATTTCCAGGAAACAGAGAACAGGACAGGTATCTTCCTATAGCAAACGTGAGTAGGATCATGAAGAAAGCATTACCAACTAACGGTAAGATATCAAAGGAAGCTAAGGAGACTGTTCAGGAGTGTGTGTCAGAGTTCATCAGTTTCATCACTGGGGAGGCATCTGATAAGTGCCAAAAGGAGAAGAGGAAGACAATCAACGGGGATGATATCCTGTGGGCCATGACTACACTGGGTTTTGATGACTATGTGGAGCCTCTGAAGGTTTATCTGCAGAAGTACAGGGAGATGGAAGGGGAGAGGACTACCTTGACTGATAGGCAACAAGGTGATCAGAGAGATCATGGTGCTAATGGTGGTGAAAGTACTAGCACGGGTGGTCTCAGCAGTGGATTTTCAGGAGGTTTTGAAAGAAGCACAGGTAGAGGTGATGCTGCCGTTTATGGTCAAAGTGGAGAGCAGACCACTGAGCTGATGATGATGATGAGTCATCATGCTCATGGTAATCATCAAAGGCACATTTATGGATCTGGAAATGGAAGGAAAACCTCTTCTGGAAGGACTAGACATCTGGCAAATTATGATCGACCAGTTTCCATTAGAAACCATTGGCTGCTAGACTTACAGTTGGAAAAGTCAGTCAGACTTTCTGTCAATTCGTGCTGTTGCAGATTTGGTTGGATCGTTGTTTTGCACTTTAATTCATGTGCTACCACCTGTAATCCGAAAAGGCAAGTGGACACAAGGGGGAATACATCCTTTTTTCAGTTTCACTTTGATCATCATAGTTTAGTTTACTTACTTTACCAGTGA 873 0.4456 MADSDNESGGAYGVVRGSCSEFPGNREQDRYLPIANVSRIMKKALPTNGKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDILWAMTTLGFDDYVEPLKVYLQKYREMEGERTTLTDRQQGDQRDHGANGGESTSTGGLSSGFSGGFERSTGRGDAAVYGQSGEQTTELMMMMSHHAHGNHQRHIYGSGNGRKTSSGRTRHLANYDRPVSIRNHWLLDLQLEKSVRLSVNSCCCRFGWIVVLHFNSCATTCNPKRQVDTRGNTSFFQFHFDHHSLVYLLYQ* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00545 290 MobiDBLite consensus disorder prediction 120 134 - -
Pte19g00545 290 FunFam Nuclear transcription factor Y subunit B-3 20 144 - -
Pte19g00545 290 MobiDBLite consensus disorder prediction 120 167 - -
Pte19g00545 290 SUPERFAMILY Histone-fold 28 133 IPR009072 GO:0046982
Pte19g00545 290 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Pte19g00545 290 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Pte19g00545 290 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Pte19g00545 290 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 170 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte19g00545 290 MobiDBLite consensus disorder prediction 189 208 - -
Pte19g00545 290 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte19g00545 290 Gene3D Histone, subunit A 21 145 IPR009072 GO:0046982
Pte19g00545 290 MobiDBLite consensus disorder prediction 135 156 - -
Pte19g00545 290 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00545 Pte-Chr19 4318524 4320311 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00545 1 132 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.030 5.12e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte19g00545 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00545 K08065 - rcu:8260269 228.024