Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00536 ATGGGTTTGACAGATTTACTTTTGAGTGATTCCATGCAAGATCTCGAGTTAGCTGATGCTGATCAGGCTTATTTATCTAAACAATTGGTTCAGAGGAAATTAAAATCCAGATGTTCAGATATTGTGTGGTTTGGCATTGCTTGGTCCAGTAAGGAACAGCTTAAGCACTATTCAGCCTTTTGCAAAAATGCAATATTAATACCTGTTCATTCTTTTGTTCATGTTTTGGCTGAAGACGAAATTAACTACCTTGGTTACATTGAAGACATGTATGAAGGCAAGAAAGGAGAGAAGAAGGTACAAGTTCGTTGGTTTCACCACAGCCAGGAAGTCAAGAGTGTATTCCCCAAGCTGAATTTACACCCCAGAGAAATCATCATGACACCTCACGTTCAGGTTATAACTGCTGAGTGTGTTGATGGTCCTGCAACAGTTTTGACTCCTAAGCATTATGAGAAATGCTTGGCTACTGGGCCTTATTCCTCCTTTTCTGGCTTACATATATGCTTGAGACAGTTCAAGGATAACAAGCTCATGCCTTTCACCATAAGTAAGATGCAGGGTTACTGGAATCAAACCATGCTCTCTTGTTTGGACGGTCCTACGGCTTACAGGACAGAGTGCCACAAGCTGCTTAGTGAAGATGAGGAATGCTTCATTGATTTCTTGAGATCTTTTGGAATGAGGAATAGCAATTATTCAGCACTTGGAAATGGTGCTTCTTGTCGACTGGGTTCTACACCTATGGACCAGGGTACTGTTTACAAATCAATGGACCCTATGTTGCAGTTAAGGCTGTCAAGTAAAACAATGGGCATGGAATTTCTTGAACCAGAGCTTCAAACTGATCTTCCGTTTAAGGCTGGTGACAAGATAGAGCTGCTATCTCAAGACAGTGGCATCAGAGGGTGCTGGTTTCGGTGTAAAATCTTGACTATGTCCGAGAAAAAGTTGAAAATCCAATATGAAGATGTGGAAGATGTAGAGGATCTTTGCAACTTAGAGGAATGGGTTCCAGCATGTAGAGTAGCAGCTCCTGATAAACTTGGAATGAGATGTCCAGGCCGTCAGACTGTACGTCCATTCCCCCCTGAAGATTCTACTAACTGTTTTGTTGAGATTGGAACGCCAGTTGATGCGTGGTGGAGTGATGGCTGGTGGGAAGGTGTTGTATCAGGAATTAATGTTTCTGGAAAGGATACCCTGGAAGTTTATTGCCCTGATGAAGACAGATTTCTGACAGTTGAGAAAAAGGATGTTAGGACTTCCAGAGATTGGGATGGTGACAAATGGGTCGAGGTGATGGTGAACCCTGATATACTGACCCGTATGTTATCAATTGTCAGTTCCAGCGCAGATCTGTCTGTATCGGCAGCTGTGGGTGGAACCATATCTTGTGTTTCTGCAGCTGTGGATGATGGAGTCCTTCAAGTTGAAGCTAATGAAGATGACCAGGCAGAATCACTTGAAGTTCATCTTTCTGATAAGCTTGAAAGTATAAATGTGGTCAGATTTAGGAATTGA 1524 0.4239 MGLTDLLLSDSMQDLELADADQAYLSKQLVQRKLKSRCSDIVWFGIAWSSKEQLKHYSAFCKNAILIPVHSFVHVLAEDEINYLGYIEDMYEGKKGEKKVQVRWFHHSQEVKSVFPKLNLHPREIIMTPHVQVITAECVDGPATVLTPKHYEKCLATGPYSSFSGLHICLRQFKDNKLMPFTISKMQGYWNQTMLSCLDGPTAYRTECHKLLSEDEECFIDFLRSFGMRNSNYSALGNGASCRLGSTPMDQGTVYKSMDPMLQLRLSSKTMGMEFLEPELQTDLPFKAGDKIELLSQDSGIRGCWFRCKILTMSEKKLKIQYEDVEDVEDLCNLEEWVPACRVAAPDKLGMRCPGRQTVRPFPPEDSTNCFVEIGTPVDAWWSDGWWEGVVSGINVSGKDTLEVYCPDEDRFLTVEKKDVRTSRDWDGDKWVEVMVNPDILTRMLSIVSSSADLSVSAAVGGTISCVSAAVDDGVLQVEANEDDQAESLEVHLSDKLESINVVRFRN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00536 507 Gene3D - 32 184 IPR043151 -
Pte19g00536 507 ProSiteProfiles BAH domain profile. 65 184 IPR001025 GO:0003682
Pte19g00536 507 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 279 453 - -
Pte19g00536 507 SMART agenet_At_2 373 428 IPR014002 -
Pte19g00536 507 SMART agenet_At_2 284 349 IPR014002 -
Pte19g00536 507 Pfam Agenet domain 289 364 IPR008395 -
Pte19g00536 507 CDD Tudor_Agenet_AtDUF_rpt1_3 286 364 - -
Pte19g00536 507 SMART BAH_4 65 184 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00536 Pte-Chr19 4262889 4269288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00536 296 427 PHD Transcription Factor Family AT5G58610 25.735 5.78e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00536 - - qsa:O6P43_031360 517.694