Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00529 ATGGAAATGGAACCTGGTAAGCTTTTCATCGGTGGAGTGTCATGGGACACGAATGAAGACCGCCTAAAACAGTATTTTGAAATGTATGGAGATGTGAGGGAAGCTGTGATAATGAAGGATAGGAACACTGGTCGTGCACGTGGATTTGGATTTGTTGTTTATGCGGATCCTGCTGTTGCAGATCAAGTGGTTATGGAAAAACATGTCATTGATGGCAGAACTGTTGAAGCAAAGAAAGCTGTTCCTAGAGATGATCAGAACAATCAGAACAATCAGACCAAGAGCAGCGTTAATGGATCACCTGGTTCTAACCGTAAAAAGAAGATTTTTGTGGGAGGTTTAGCCTCCACTGTCACAGAGAGTGATTTTAAGAATTATTTCGATCAGTTTGGAACAATTACAGATGTTGTTGTGATGTATGACCATAACACGCAGAGGCCAAGGGGTTTTGGATTCATTACCTTTGACTCTGAGGAAGCTGTGGATAAAGTTCTATACAAGACCTTTCACGAACTCAATGGTAAAATGGTGGAGGTTAAGCGTGCTGTCCCAAAAGAGTATTCTCCTGGTGCAACTAGGGGCCAATTAGGTGGATATAACTATGGTCTTAATAGAGTTAACAACTTCCTCAATGGTTACATTCAGGGATGTAATCCAAGTTTAGCTGGAGGGCATGGGCTGGGAATGGATGGCAGGATCAGTAGTTCTCTATTGCTGGGCAGAAGTGGATATCCACCTTCGGGTCCTAATTACGGAATAGGACTCAATTTCGAGCCAGCACTGGGTCAGAGCACAAATGCAAACTTTATTACTGACCATGCTATTGGACAGCAACTGAATTCTTTGTTCAATGGAAATTCAAATAGATACAGCACAACTATGGGATATAATAGTGCTGCCAATGGAGTTAACAATTCAACCATAAGATCGAACATTCAGAATCTTTGGGGAAATGGAGGCCTTACAAATGTCACCAGGTCCCCTAACTCTGGATCTCTAGTGGGATATGGAAATGATTCAACCACAGGTACTTTTGGCAGCATTGGATCACCGTGGCATTCTGCAAGAAATTCAGGACAAGTAGGAGGTGGTGGTTTCCCCTACAGTTTGCATAATGGTGGTTATGGCAGTGGAGATATGAATATGAGCTTAGGTTCCGTAGGATATAGAAGGAATAATGGAGCCATTGGGCCACCAGGCTTGTCACATTCTGCTTCCAGTGGCAACTATACTAGGGAATATACTGATGATTTTGAACTTGGGTCATTTCATGGAAAATCTGCTTGGCTATCTTCACCTCTAGAACTGGACAATTCTTGTGCACTTGGTAATGGTTTTGGAAATGTGACCTCAGATTTTATGAGTGAAAGGTCCACTAGTTTGATCGGAACTTAG 1395 0.4244 MEMEPGKLFIGGVSWDTNEDRLKQYFEMYGDVREAVIMKDRNTGRARGFGFVVYADPAVADQVVMEKHVIDGRTVEAKKAVPRDDQNNQNNQTKSSVNGSPGSNRKKKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDKVLYKTFHELNGKMVEVKRAVPKEYSPGATRGQLGGYNYGLNRVNNFLNGYIQGCNPSLAGGHGLGMDGRISSSLLLGRSGYPPSGPNYGIGLNFEPALGQSTNANFITDHAIGQQLNSLFNGNSNRYSTTMGYNSAANGVNNSTIRSNIQNLWGNGGLTNVTRSPNSGSLVGYGNDSTTGTFGSIGSPWHSARNSGQVGGGGFPYSLHNGGYGSGDMNMSLGSVGYRRNNGAIGPPGLSHSASSGNYTREYTDDFELGSFHGKSAWLSSPLELDNSCALGNGFGNVTSDFMSERSTSLIGT* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00529 464 Gene3D - 86 202 IPR012677 -
Pte19g00529 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Pte19g00529 464 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Pte19g00529 464 Gene3D - 5 85 IPR012677 -
Pte19g00529 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte19g00529 464 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte19g00529 464 CDD RRM2_Hrp1p 108 185 - -
Pte19g00529 464 MobiDBLite consensus disorder prediction 75 104 - -
Pte19g00529 464 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Pte19g00529 464 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Pte19g00529 464 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Pte19g00529 464 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Pte19g00529 464 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 3 458 - -
Pte19g00529 464 MobiDBLite consensus disorder prediction 84 103 - -
Pte19g00529 464 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte19g00529 464 SMART rrm1_1 108 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00529 Pte-Chr19 4224263 4227467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00529 8 181 Eukaryotic Initiation Factors Gene Family AT2G23350 25.843 3.24e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00529 K14411 - qsa:O6P43_031333 565.459