Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00527 ATGGTTTCACTACAAGAGACTAATCCCAATTCAAACAGGTTCCCTTTACAGGGAAACTACTGTTCTACATCTGCTTCTTCTGCTTCAACCAGAGATAAAGTCCAAAGAAATGTCGGGCGTTCCATGCGAACTATTCGCTCCAATTTATTTCAGCATGACCATAGTTGCTCTTTCACTTCAGTGACCAGAAATTCCGGCTTTGTTTCTGAGAATCTAACTGAATCTATTATAGACATGAGACTCGGCGAGCTCGCTTCCAAAACCAACCAATCGCTCAAGTCGTCTTCTACTCAAGAGGAGTTCCTCGACCTTTCTCAGGCTTTCAGTGAATTTTCAAATTGTAGCAGCGATATTTCGGGGGAGTTGCAGAGACTAGCGAACTTGCCGCGTTCGAAGGATGTGCAGAGCAACAATGGCGAAGCTAGGGAAGTGGATACTGAGCTGGAACCTGAGCCGTGCTTGGGTTTTTTGCAGAGGGATAATTTTTCGACGGAGATTATTGATAGTATTTCGCCGGAGGATCTTCAACCGACGGTGAAGATCTGTATTGACGGGCTGCAATCTTCGTCGGTCGCGGTGAAGCGATCTGCTGCTGCCAAGCTCAGGTTACTTGCGAAGAACCGAGCTGATAATCGAGCTTTGATCGGTGAGTCTGGTGCGATACCTGCTTTGATTCCTTTGCTTCGGTGTAGTGATCCATGGACACAAGAACACGCTGTGACTGCTTTACTGAATCTTTCACTGCACGAGGATAACAAGGCAGTGATTACTAATACTGGTGCTATCAAGTCATTAGTTTACGTGTTGAAAACTGGGACTGAGACTTCGAAAGAGAACGCTGCTTGTGCTTTGTTGAGTCTGTCGTTGGTTGAGGAGAACAAGTGTTCGATCGGAGCTTGTGGGGCAATACCACTTCTTGTTGCATTGTTGTTAACTGGGTCTAGTAGAGGAAAGAAGGATGCGTTGACGACACTGTATAAGCTTTGTTCTATAAAGATTAATAAAGAGAGGGCATTGAATGCTGGAGTTGTGAAACCACTCGTGAATTTGGTGGCAGAACAAGATACAGGTTTAGCTGAGAAGGCCATGGTGGTTTTGAACAGTTTGGCTGGTATTGAACAAGGGAAAGAAGCAATTGTCGAGGAAGGTGGGATCGGGCCACTTGTGGAAGCGATTGAAGATGGAACTGTGAAAGGGAAGGAGTTTGCTTTGCTGACGTTGCTGCAGTTGTGTGTCGGTAGCGTGAGGAATAGTGGGTTGTTAGTTAGAGAAGGTGGAATACCTCCTTTGGTTGCTTTGTCACAGACTGGAAGTGTTCGAGCGAAGCATAAGGCGGAGACGCTGCTTCGGTACTTGAGAGAAACAAGACAAGAAGCATCACCTTCACCTTAA 1392 0.4598 MVSLQETNPNSNRFPLQGNYCSTSASSASTRDKVQRNVGRSMRTIRSNLFQHDHSCSFTSVTRNSGFVSENLTESIIDMRLGELASKTNQSLKSSSTQEEFLDLSQAFSEFSNCSSDISGELQRLANLPRSKDVQSNNGEAREVDTELEPEPCLGFLQRDNFSTEIIDSISPEDLQPTVKICIDGLQSSSVAVKRSAAAKLRLLAKNRADNRALIGESGAIPALIPLLRCSDPWTQEHAVTALLNLSLHEDNKAVITNTGAIKSLVYVLKTGTETSKENAACALLSLSLVEENKCSIGACGAIPLLVALLLTGSSRGKKDALTTLYKLCSIKINKERALNAGVVKPLVNLVAEQDTGLAEKAMVVLNSLAGIEQGKEAIVEEGGIGPLVEAIEDGTVKGKEFALLTLLQLCVGSVRNSGLLVREGGIPPLVALSQTGSVRAKHKAETLLRYLRETRQEASPSP* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00527 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 219 261 IPR000225 GO:0005515
Pte19g00527 463 MobiDBLite consensus disorder prediction 1 31 - -
Pte19g00527 463 SMART arm_5 414 454 IPR000225 GO:0005515
Pte19g00527 463 SMART arm_5 331 371 IPR000225 GO:0005515
Pte19g00527 463 SMART arm_5 249 289 IPR000225 GO:0005515
Pte19g00527 463 SMART arm_5 208 248 IPR000225 GO:0005515
Pte19g00527 463 SMART arm_5 290 330 IPR000225 GO:0005515
Pte19g00527 463 SMART arm_5 372 412 IPR000225 GO:0005515
Pte19g00527 463 FunFam U-box domain-containing protein 4 165 317 - -
Pte19g00527 463 Pfam Armadillo/beta-catenin-like repeat 297 330 IPR000225 GO:0005515
Pte19g00527 463 Pfam Armadillo/beta-catenin-like repeat 210 247 IPR000225 GO:0005515
Pte19g00527 463 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
Pte19g00527 463 PANTHER U BOX DOMAIN-CONTAINING 133 453 - -
Pte19g00527 463 Gene3D - 165 460 IPR011989 -
Pte19g00527 463 SUPERFAMILY ARM repeat 175 452 IPR016024 -
Pte19g00527 463 FunFam U-box domain-containing protein 4 318 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00527 Pte-Chr19 4190661 4192465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00527 174 457 U-box Gene Family AT2G23140 48.239 6.08e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00527 - - qsa:O6P43_031331 672.93