Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte19g00523 ATGTCTGTCGCCCATAACCCCACCGTCGACTGTGTCCATCAGCGTGGTACCTCAGCTGCCGCCGATCACCATCGTCTCTCTTCCAAGAGGAAGTTGGATGATTACGGGGGTCCTTACTTCGATGAAGACGGTGAAGTCGACGATTACGTTAAATTCCTGGATTTTGCTTCTAGTAGGATGAGGAAGGACGGTCCTAACGCTGTTTATTCCTTCTCCAACGGTAAGTCTGACACTGTGATCGGTGGTTCTGTCTCTGCCGTTGATGACAGGGTTTCTGAAGCGCGATCGGGGTTCTATGCTTGCTTGACTGCGTCTGTGCCAACTCCGTCCTTTTGGAGGTTACAGTTCTTCGTAAGGATGATATCGGAGGGAAAGACTATGGTGCTTCATGGTTATCCTGATGAAACGGTGAAATCTCTTCACGAACGAATTCAATCCATGACGGGGATTCCGGTGTTTGAGCAAAGATTGATTTACAGAGGGAGGCAACTTCAGTGGGAGCAGTCTCTAGCCGAGTGTTCCATCCAAAACGATGCTAGTCTTCAATTGGTGGGTCGTATGCGAAGCACGGAGCATCCACAAGCTTGGCAGTTGGTAAACGATATGGTCTCTCTTGTATGCAGACTCTGCAAAGGTGAAATCCTCCCTGACGCTGTCAAAACAATCAAAGGGCTGATAAGTAATTACCTGAATTTGACTCCTAGGCCAGATAGTGATTCTGCGTCGGATTATTTCCAAATTTTTCTGTCTTCTTCTGCGCCGGCTGTTTTGGTGATGCTTTACATGTCTCCCCTTAAAGTGTGCACAAGTGGTGTTGGAATTCTGTAA 828 0.4783 MSVAHNPTVDCVHQRGTSAAADHHRLSSKRKLDDYGGPYFDEDGEVDDYVKFLDFASSRMRKDGPNAVYSFSNGKSDTVIGGSVSAVDDRVSEARSGFYACLTASVPTPSFWRLQFFVRMISEGKTMVLHGYPDETVKSLHERIQSMTGIPVFEQRLIYRGRQLQWEQSLAECSIQNDASLQLVGRMRSTEHPQAWQLVNDMVSLVCRLCKGEILPDAVKTIKGLISNYLNLTPRPDSDSASDYFQIFLSSSAPAVLVMLYMSPLKVCTSGVGIL* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte19g00523 275 ProSiteProfiles Ubiquitin domain profile. 114 190 IPR000626 GO:0005515
Pte19g00523 275 SUPERFAMILY Ubiquitin-like 115 202 IPR029071 -
Pte19g00523 275 SMART ubq_7 114 186 IPR000626 GO:0005515
Pte19g00523 275 Pfam Ubiquitin family 117 188 IPR000626 GO:0005515
Pte19g00523 275 PRINTS Ubiquitin signature 146 166 IPR019956 -
Pte19g00523 275 PRINTS Ubiquitin signature 125 145 IPR019956 -
Pte19g00523 275 PRINTS Ubiquitin signature 167 188 IPR019956 -
Pte19g00523 275 Gene3D - 112 213 - -
Pte19g00523 275 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 115 265 - -
Pte19g00523 275 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 108 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte19g00523 Pte-Chr19 4158711 4159621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte19g00523 114 235 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.000 2.19e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte19g00523 - - qsa:O6P43_031321 336.65